G452792


Basic Information

Item Value
gene id G452792
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000319
NCBI id null
chromosome length 6428943
location 6114501 ~ 6116089 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU519867
TCTTTATTGATTTGTAAAGAATATAAATCAACAAAAAACAAATGGCTACGCACCAAAATCTTATAAAACATGTAAAACGGCAGTTAGACTATTCATACAAAACAAATAGAGAATGTATAAAATGTCTTGACATGCACCGATTCAAATTCACTACCTTGAGTATTAATTGAAAAATAATTTTGGTAAACAAGAGTGTAAAAACAGCAGGGAAAAGGCCCAACAAATTGTATAAAATTATATGCAATGCACATGTATATGCAGTTTACATGTCAATACACTGAAATATGAAGGATTCAAAAGACAAAAAAAAAAAAAAAGAAAATTAATACAAACAACAGAGGTCTTGCAAAATTACATTGAAAATACACTCACAAAGAAATTCTTTTCAGAAACATATGATTCAGATAATAATTACATTGAAAAAGATATACTGATAATAACTGCACATAGTACTGTTAGTAATGGCCCGTCTTTCACAAAATGTATCATTGTCATTTCACAAAATTCATGGTCTGAATAAATAAATTATTTGTAGTGATCCTTCATAATCGCCTGCACATCATGAACGTTTAAAGAAAGGGGGCTTTAGATTTTCAGTGACAAATCTGTATTTTACAAACTGTGTGTGTGTGCATAGTTTACTGAAAAACTTTCTTGTTTCTTATGTCATGTTAAGGACTGTAATATAGTCTGTATATATTGCCAATTTTAATGATGCCAGCCTATAAACTACCAGGGCTTTAATTGAATTATTAAGACAGTTCTGCAATTTAACTTTGCTGTTTAAGACCACAAATGCACAAGTCTGAAACACAAGGAAAGCAAGTGATTACAATTAGCCCTTAATAGTATATTTTCAGAAATGTCTGGCTAATAATGACAATCAATTGAAGTTTTGCACCACGCACATCCTACATTGATCATCATTACATTGTGATGAGTTAATATCAAGATTCAGCAGCTAGTCCTTTAAAATTCAGTTCAAGCAGACAGCAGTGATACTTCGAAGCTGATCTAAAATGATCTGAAAAGTAACTGACTGATGCTGTTGTGACCTCTAATACTGAAGCAAATGACTGGGATAAAACAAAAAACATTAACAAGTTTACATCATCACTTCACCCAGTAACGCATAATAATCAATTATAATACAATTAATTATGATGACGGAATAAGAATGGGGTTACAATTCAAAATATTTCATTGTATTTAGATGTTTTAAACTGTAAATATTTTATAAACAGTACAGGCTATATGGACCATCTTGAGTTGGGAAACCAACAAGTGTCTATAAGACGCCATATACACTGGTGGTGAAAAGTTTGGAATCAGATTAAATTTGTAATTATTTTGAAGCAAGTCTCTTATGCTCACCAAAGCTGCATTTATTTGATGAAAAATACAGTAAAAACAGTAATATTATGAAATATTATTTTAAATAAATTAAATATCTGCTTTCCATTTGAATATAGTTTAAAATGTAATATATTTCTGTGATGCAAACCTGAATTTTCAGCATCATTACTCCAGTCTTTAGTGTCACATGATCCTTCAGAAATCATTCTAATATGCTGATTTGCTGCTCAAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU519867 True 1589 lncRNA 0.30 1 6114501 6116089

Neighbor

gene id symbol gene type direction distance location
CI01000319_06103395_06107623 NA coding upstream 6019 6103260 ~ 6108482 (+)
CI01000319_06100790_06101982 MRPL24 coding upstream 12423 6100206 ~ 6102078 (+)
CI01000319_06070748_06083546 FAM63A coding upstream 30737 6068131 ~ 6083764 (+)
CI01000319_06054270_06057766 SF3B4 coding upstream 56602 6053847 ~ 6057899 (+)
CI01000319_06044073_06049600 NA coding upstream 64540 6044073 ~ 6049961 (+)
CI01000319_06133262_06139477 PBXIP1A coding downstream 17173 6133262 ~ 6140633 (+)
CI01000319_06142385_06143926 S100A11, S10AB coding downstream 26296 6142385 ~ 6144063 (+)
CI01000319_06150880_06153732 NA coding downstream 34791 6150880 ~ 6154429 (+)
CI01000319_06156655_06161968 S100T, S100S coding downstream 40566 6156655 ~ 6162746 (+)
CI01000319_06175244_06178365 NA coding downstream 59155 6175244 ~ 6178461 (+)
G452768 NA non-coding upstream 25878 6085839 ~ 6088623 (+)
G452881 NA non-coding upstream 50129 6063018 ~ 6064372 (+)
G452760 NA non-coding upstream 53996 6058549 ~ 6060505 (+)
G452880 NA non-coding upstream 62933 6051367 ~ 6051568 (+)
G452856 NA non-coding upstream 128436 5985708 ~ 5986065 (+)
G452782 NA non-coding downstream 178 6116267 ~ 6118185 (+)
G452895 NA non-coding downstream 113527 6229616 ~ 6229948 (+)
CI01000319_06316911_06319511 CKS1B.L, BRAFLDRAFT_59154, CKS1, CKS1B, CKS1B.S, CKS2 non-coding downstream 200519 6316836 ~ 6319569 (+)
CI01000319_06321729_06328918 NA non-coding downstream 206057 6321729 ~ 6329654 (+)
CI01000319_06373867_06384385 NA non-coding downstream 258731 6373484 ~ 6384471 (+)
G452735 NA other upstream 381565 5712686 ~ 5712732 (+)
G452543 NA other upstream 743017 5359700 ~ 5371484 (+)
G452545 NA other upstream 758466 5353694 ~ 5356035 (+)
G452541 NA other upstream 767507 5336085 ~ 5353023 (+)
CI01000319_04787066_04788609 EIF1B, EIF1, GM6900 other upstream 1323972 4787040 ~ 4790529 (+)
G452884 NA other downstream 6555 6122644 ~ 6124939 (+)

Expression


Co-expression Network