XLOC_013098


Basic Information

Item Value
gene id XLOC_013098
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 49124765 ~ 49156952 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026012
gaactgagagagagagagagagagagagtgagtgagtgagtgagtgcgagagagggagagagagtgagCGGTTCTGAGCAACACTGAGAGCTTACGAGGGAAGATGCCAGACAAAAATATGAAGTCTGGAGGAAAGACCTGAGCGCACTTCAAAACAGGAGCGAAAATAACCACCGAGCACACATTCTCAATccaaaagagaaactttaaaGGCAAATCCAGGATATTTGTGGATTGGAATTGTTCCGGACGTTGACTGTGGATGCTGTAACACTGTGTCAGACGGGATCTCAATATTTAAAGCCAGCACAAAGCGTCCTCTCTCCTTCACAGcagctctctttttctctctcgtCTGGATAAACACACTGCTTTTTGGCCTCTGACCTCCAAAGCGGCCCTTTCCATCTGGTCTCCAACTTCACGCTTTAATCTTTATCATTTCCAATTGAAAGTCGACCCGTTTTCCATTCCAGCACCAGTTTGCTGTCGCGATACAGGAGACAACAGGCTGATTTCTGCAGAGAGATTTCTCGACTTGTGCTTATTTCGGATGCGCACAATCTGGACAACAGCTTCAAGGCAAACACTGAGAAGATTTTGAAGAGGATTTGGACACATTTTGGATGTGCACAGCTTTAAGATAAACACAAACAAGATATGAAAGAGATTTGGGAGTTGGTTCAAGACAAACACTGAGAAGATTTTAAAGAGACTGATTTTGGacttttggtgtttttttttttttggatgtgcaCAATCTGGACAACAGCTTCAAATCAAACCCTAAGATGATTTTAAAGAGATGTTGGACTAGTTATTTTGGATTTGCACAGATTTAAGGCAAACACTGAAAAGATTTTGAAgagattttgcatttattttgggTGTGCACGGCTTCAGATCAAACACTGAGAAGATTTTGCACAGAATTTGgatgtgttgttattttggatGTGCACAGTCTATACAACAACATCAAGGGCACTTGGATTTGTTTTGGATGTGCACCAATTTAAGGCAAACAGGGAATATTTTGAAGAGATTTTTGGACTTGCCATTGTAATTTTGTATGTGCACGGCTTTAAGACAAGCACTGAGAAGATTTTGAAAAGATTTTGGTCTTAAATTGGATGTGTACGGCTTTAAGACAAGCACTGAGAAGATTTTGAAAAGATTTTGGACTTATTTTGGATGTACACAGCTTCAAATCAAACACAGACAATTTTGAAGAGAATTTGGTCTTATTTTGCATGTGCACGGCTTCAAGACAAACACTGACAAGATTTTGAGGAGTTATTGGACTTATTTTAGATGTGCACAGCTTCAAATCAAACACTGGGACTGTTTTAAAGAGATTTTTGaactttttaatgttattttgttgTGCACGGCTTTAAGGAAAACACTACGAAGATTTTGAAGcgattttggttttgttttggatATGCACGACTTCAAGACAAACACAGAGAAGATCTTGAAGAAATTTTGCACTTATTTTGGATGTGAACAGCTTCAAGACAAACTCTGAGAAGATCTTGAGGAGTTATTGGACTTATTTTGGATGTGCACGGCTTCAAATCAAACTCTAAGTAAATTTTGAAGCGGTTTTGATCTTACTTTGGATGTGAACATCCTCAAGACAAACACTAAGAAGATCTTGAGGAGATGCTGGACTTATTTTAGACGTGCACAGCTTCAAGACAAACACTGAGAAGATCTTGAAGAGATTTTGCACTTATTTTAGATGTGCACATCTTCAAATCAAACACTGGGACCGTTTTAAAGAGATTTTTGGACTTGTATTGTTATTTTGAATGTGCACGGCTTCAAGGAAAACACTAAGAAGATTTTGAAGGGATTTTGGTCTTATTTTGGATATGCACGACTTCAAAGCAAAACTGTGAAAATCTTGAAGAAATTTTGGACTTATTTTGGACATTAACAGCTTCAAGACAAACACTGAGAAGATCTTGAAGAGATTTTGCACTTATTTTAGATGTGCACAGCTTTAAGGCAAAACTAAGAAGATTTTGAGGAGATTTTGGtcttattttaaatgtgcatgacttcaaatcaaacacagagaagaTCTTGAAGAAATGTTTGACTTATTTCAGATGTGCACGGCTTTAAGGCAAAACTGAGAAGATCTTGAGGCGATATTGGACTTATTTTGGATGTGCACTGCTTCAAGTCAAACCCTGAGAAACAGAAAGACTTCACTGGCTGCTGTTGGAGTGAAAGATTAATGAACATGTTTCTGCGTCTCTCTCTTCACACCACCGTCACACAGTTTCATCCTTCAGCACAACCAACAAGCGTGGTGTTTTGAGCTTCAGTGGATCGTCTGAGCTGCGGATATCAAGGATCGCTGAAGATTTTTTCAGGAAGCAAGAGGGTGGTGGGAAGACTGACAGAACTGGACCAGACGGAGGAAAGAGTGTCGGGGGAACGGACCGGGGCCGCCTGGAGCTTCCAGCAGTTCTTTCGGGTCCTGCAGGAATGGATGCAACAGCGGAGTAAAAAAGAGGACGGGAAGTTTCTGCTTTCCCACTGGTACAATGTGTGCAGGCGTGGCTCCCCCTGGAGGTGGGGATCAGTGATGTTAAACATGCTCCCCCATGGCCATCATCACAGGTGTCGGGCCATCGCGGAGGAGCCAGAGAACGACCGGGAGGAGAGGATTCTGGCCATACTGGGGATTATCGGCACCGTGCTCAACCTGCTGGTGGTCATCTTCGTCTACATCTACACCACGTTTTAAGTTTTCACACTACAGGATGCCTCGACCTGAAGGAATAAAGCAGAGGAGAACAGAGGCGGGAAAACACTGGCATCCTTCATCCTCACCGAAAACCATCAAGCAGTGCCTGAGCTATTCAATCAGTCCCACAAATGCAAGCGTTGCGTTTGAGACTAGCTTTTCGTTTCCGTCGGTACGAAAGATTACACATCATTGATTATTTGTACATGCGTTCATCATGTTGATTTTTGTATAGTCTTTAAGTGATTATGACTGCATGTTCTGGGGTTTTCTTATGTATAGTATCATATGCTATTTCAGATGTGTGTGACTTTCACTTGCAGATGATCGTTCATCGGGGATAAAGAGGGACGTGAAGATACGGGTGTTTAAATCTGTGTTTGAACATGCAGAGATGGGAATGGTATTAGTCATTTATGTGACACGTtataataacagtacatgaatactGATGTTGCTTCATTATGAACTAGTGATGAGTTAAGGCGTGCACTATTCAAGAGCTACAACATGAGTTACATGACTACCTTGACTACTGGttagttcatgtttgttaatTAGTTTATTAGTTCTCAACACAGGCTCGTTGTGAAAATGCACCTCcgtatacatttatggagagtgCCGATTATGTATCCAGAGTTCCGGATGacagcatttcatttttaaaatgaacactagggggctgTATGATGCCGTTGACGACTTCAGTTTCTTttcgtgctaccagctgaccactagggggctttcaagagttcacacttagctcatgatttatacatagcttgtttggcatgctgtcccgggaaagagcccgtgagctcaagggatcctcgtcCCCAGGGCTCCCCCTTTTGCAgagcgaggggagattgagcttgatctcaaactcccccaCTGGTGAGGCCAAGGGGAACTTcccatgctcctctcgaaattagtttaaaactaaacttcacgtATGATGCCGACGACGACTTCTGTTTCTTTTcctgctaccagctgaccgcttacctctgtgtggacggcttttccgatgttaccagtttgcccagtagctcgccatgtacattgacggacttgagacacagagaagaATTGATTGTGATGACGTGGTTTGAGTCCGTCAAAGAatgtttccagaaagcaggtaaaacaaaatcaaaaggcacagaataaaataaacaagtaaataacagagtgaaaatgtagtaaaatctgaaaatgtggtaaaaatcaggcggccgcgagggcttttctttttctgaattgcttttgaaaacactatcggttgggtttagggaaggggcgggcgctggtcaatctgtgcttttgaaaacactatcggttgagttatgggaagggggtgggtgggtgtgtcagtcagtcagtcagtcagtcagtcagtcgacagtggcctctggtggatttaacaAGAatagcaggcacaaatggcacttgcgagagaaatttgaaatctgaaaaagcgtacacagcgacctctggtggatttgtgaaaacaaaaattgcaaaaaaaacgtacctcctgggatgtatttggtgcttctcagaaatgtatataggggtatgtatcaATAATGGGCCTGggttgttattttgtttattgtatgtttatgtcatgactttactttgaGGGGCGCATTATCATCAACTCATTCTAATCtttgcatttttattgtttaaacagTTTTGAATGTCCTTCTAGTGTGTTATTTGCGTTGAAAAAAACAATAtaagaaagaaagtaaataacagggtaagaatgtggtaagaACTATAATAAACGTGGTGAAATTTAGGCGGCCGTGAGGGCTCTTCTTTttttgaattgcttttgaaaacaccaacCTAAGCTCATTCTCAAAAagcgtagtcccgcggacgtttctggagacagcggaatacgtcccggggggtacgtacagctgcgtttatttttttcaagcgaacgctgcggggcggtgtgacgctgttccctttcgcgcttgccttacctccttgtggagggcttccccgctgcaacccgtttgtccactcagcgtgtacgtcggcaggttCGAGAtgcagaggagttgaccacggtgaccggtttcgagtccggggaagagcagttccagccatcaggtaagacgaaaacagaatACCAAAAATTAAgagaacgagtttcgtaacagggtgagaacgcggcgaaatccgaaaacgtggtagaaaaaaaaaaggggattggtcggtcagtcagtcagtcaatcgacagcaacctctggtggatttacgcaagaacagctcgtgagagaaatttgagatctgaaaaagcgtacacagcgccctctggtgcaTCCGGAAGAAcaaaacctgtaaaaaaaaaagtacctcctgggatatatttggggctcttcagaaatgtatacaggggtacatatcaatgAGTCTGGGTTGTTAGTTTTAGCTAAATGTACCTAACATTAATTGAGTTGTTAATGCATGTTTATGTCATAACTTTATTTGGAGGGGCGCATTATCATTAACTCATTCTTAATTCTTGACACcttaatattgtttatattaatacacacaagaagGACATTCatgttacatttaaataataaaagttcatGCGTAGTTAAGAAAAAGTTAATgataatgtgcccctccaagtaaagtcatgacataaacaaacattaacagctcatgagttcatgttagtTACGTTTAACTAAAACTGAAGTGTTAATGAATCTATTAACATACATAAACGAACAATGTGACTTTTGTTGTGAGATTAGCGCATGccttaaaattagtttataatgAATGAACACTTAATTAACATATtcatacatcattattcatgtactgttattgtaagtaagtgttgccagttgtttttgTTGATTTGTCTCTATAAGCACAACGAAGCAGAATGCCACATGATGTCTTGTTCTCAGGTGTTGTTTATTGCAGGGTTTGTGGGAACGTTTACTTGAAAAGTGAAGGTTGATAATAATCAGCCTCTTTAATTGGCCGTCACGCTCCCATAATGAGACTGATCTCTGTTAACACTTTCTATTCAATGTGCTTTTTGAAACTGAAATCTGTCAATCTGAGGAAAACAGTGCTGTAATAGTTTTGTACCACAAGAGTTGTTTGACAGTCGGAGTGAGTCAAGAGAAAGACGAGTTAAAAATACGCTTTTATAACGTCACGAGAAATGGTTCGACTGTTGAAATGGGCTTTTAGCTTCTTCCACAATGTTTTGaaagaaaacattaaaatttAATCAAGCT

Function

GO:

id name namespace
GO:0050953 sensory perception of light stimulus biological_process
GO:0007601 visual perception biological_process
GO:0045111 intermediate filament cytoskeleton cellular_component
GO:0005882 intermediate filament cellular_component
GO:0005388 calcium transmembrane transporter activity, phosphorylative mechanism molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026012 True 6075 lncRNA 0.41 2 49124765 49156952
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_013097 SHKBP1 coding upstream 152089 48953963 ~ 48972676 (+)
XLOC_013096 FO681288.1 coding upstream 171763 48943875 ~ 48953002 (+)
XLOC_013095 ppp1r37 coding upstream 188764 48864367 ~ 48936001 (+)
XLOC_013094 bmp16 coding upstream 311769 48793536 ~ 48812996 (+)
XLOC_013093 gemin7 coding upstream 364300 48758916 ~ 48760465 (+)
XLOC_013099 BX663503.1 coding downstream 36872 49193824 ~ 49215023 (+)
XLOC_013100 si:ch211-136a13.1 coding downstream 68600 49225552 ~ 49247479 (+)
XLOC_013101 yif1b coding downstream 91437 49248389 ~ 49267856 (+)
XLOC_013102 CABZ01070258.1 coding downstream 125111 49282063 ~ 49359785 (+)
XLOC_013103 NA coding downstream 199505 49356457 ~ 49357485 (+)
XLOC_013090 NA non-coding upstream 567938 48523937 ~ 48556827 (+)
XLOC_013089 CR786562.2 non-coding upstream 686152 48438497 ~ 48438613 (+)
XLOC_013087 NA non-coding upstream 920511 48184059 ~ 48204254 (+)
XLOC_013085 CABZ01086755.1 non-coding upstream 999877 47990791 ~ 48124888 (+)
XLOC_013084 NA non-coding upstream 1248788 47873344 ~ 47875977 (+)
XLOC_013105 NA non-coding downstream 749072 49906024 ~ 49913858 (+)
XLOC_013107 NA non-coding downstream 847782 50004734 ~ 50005794 (+)

Expression

Expression of XLOC_013098 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 6.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) LOC118944097 NA misc NC_048588.1 CM023242.2 6264040 ~ 6317522 (-)