XLOC_013099 (BX663503.1)


Basic Information

Item Value
gene id XLOC_013099
gene name BX663503.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 49193824 ~ 49215023 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026013
CGAGGAGCGGaaaatacacacactcacacgcgaCAGGACGAGGATGGAGTTGTCACTAATGGCAGCGCAGCATTTCCCAGCCGTCAGTGGAGCCTTCATGGACTCTCCATACAACGGCAGCGCGTCCCTCCAGACCTCCACCTCTAACCTGAACACCAGCATCTCTCGGCCGgcggagcaggaggaggagggcAAGTTCTCCAGTGACGCCATCTGGCTGTGGGTCGCCGTCATCGCCACCATCGGGAACATCGTGGTGGTCGCGGTGGTCTGCGCCTGTGCCTTTTAGACCCCGTAGTGCACAAGAACACAGCCTGAACTCCTGATCCCCCCTCACTAGCGCAATTGAAAGAAGCACACAGCAGCCTACTACTAAAGGATGTCTGAATGAACGTCTGTGAAGAATTCGAGTTTTCGAGGACCTCAACAGAAACTCGACATTCAGTAGTGGACATCACTGACATCCAGAAAATATCAACAcatcagtccaaacacatgcgctgtaggtgaattgaacaaactaaattggccgaagtgtatttgtgtgtgtgtgaatgagtgtttatgagggtttcccagttctgggttgcagctggaagggcatccgctgtgtagaacatatgctggaataattggcggttcattccgctgtgacgacctctgattaataaggaactaagccgaaggaaagtgaatgaatgaatgagttaatcatttcccagggatgggttgcagctgtaaggccATCCACTGcgaaaaaacatgctggataagtcggcggttcattccattgtggccaccctggattaataaagagactaagctgaaagaaaatgaatgcatgaatcaaACTGCTGATTGGTGTGTGTAAAGAAAGAGAAGCTAATCTATCTGTcaatgtatgtattttatatagaAATGGAGATGGATGCActttatttaagaatttaatGACTTTAATTATGAGtttcattgtttattcattcgtATCATCATATGTGAGTGAACAATTATCCCCTGTTTGATCTGTACAATGTCTAATATGTGAACGGACATCACTAGATCATCAGATACACTCATATTTACatgtttaacagacatttaacagtGAATTCCCTGAGGAATCATCAGAAAACAGCATTGAGGAACACACAAACCACATCAGGCGACAGAAATGGAGGacaaaactgaaatgaaaaaggATGAGCTGCACTTTTTGATGAAGCATTGGGATGGAAATATAAATCTGGACAATTAGGCTCTTCATTATGTaaatattctgtcatttattaaaaaagaaatacattaaGTAAGCTGTCAGGAAGTGCATCAGAATATCTGTATACACAACTAATCTGACTAGAATTTATGCACGACTTATACAGCTCAATAAGTGTACTCGTTTACTGTTGATCATGccatttatttccttattttatcAACAGCACACATGACTTCATTGTTTTAAATAACTGATGCTGTCTTGCATGTAAATCTCTCCGTCCTGCTTTTTTATGCACATGTTGTTCATACTGTACATAAGtgtaaaaaatgaatattcttaAAATGTTTATGCACCTAaagttacacacacatacaatatactGCTTTTTGTTCGTTTTGGACACAACCAGCAAGctcatttatatgcatttattctaTTTTTGACCTATAAAATAAATTCTATGATGATTAAAGTTATAATACATTTGTGaacttaataataaaacattttcaaagat
>TCONS_00027185
GGATGGAGTTGTCACTAATGGCAGCGCAGATTGAAAGAAGCACACAGCAGCCTACTACTAAAGGATGTCTGAATGAACGTCTGTGAAGAATTCGAGTTTTCGAGGACCTCAACAGAAACTCGACATTCAGTAGTGGACATCACTGACATCCAGAAAATATCAACAcatcagtccaaacacatgcgctgtaggtgaattgaacaaactaaattggccgaagtgtatttgtgtgtgtgtgaatgagtgtttatgagggtttcccagttctgggttgcagctggaagggcatccgctgtgtagaacatatgctggaataattggcggttcattccgctgtgacgacctctgattaataaggaactaagccgaaggaaagtgaatgaatgaatgagttaatcatttcccagggatgggttgcagctgtaaggccATCCACTGcgaaaaaacatgctggataagtcggcggttcattccattgtggccaccctggattaataaagagactaagctgaaagaaaatgaatgcatgaatcaaACTGCTGATTGGTGTGTGTAAAGAAAGAGAAGCTAATCTATCTGTcaatgtatgtattttatatagaAATGGAGATGGATGCActttatttaagaatttaatGACTTTAATTATGAGtttcattgtttattcattcgtATCATCATATGTGAGTGAACAATTATCCCCTGTTTGATCTGTACAATGTCTAATATGTGAACGGACATCACTAGATCATCAGATACACTCATATTTACatgtttaacagacatttaacagtGAATTCCCTGAGGAATCATCAGAAAACAGCATTGAGGAACACACAAACCACATCAGGCGACAGAAATGGAGGacaaaactgaaatgaaaaaggATGAGCTGCACTTTTTGATGAAGCATTGGGATGGAAATATAAATCTGGACAATTAGGCTCTTCATTATGTaaatattctgtcatttattaaaaaagaaatacattaaGTAAGCTGTCAGGAAGTGCATCAGAATATCTGTATACACAACTAATCTGACTAGAATTTATGCACGACTTATACAGCTCAATAAGTGTACTCGTTTACTGTTGATCATGccatttatttccttattttatcAACAGCACACATGACTTCATTGTTTTAAATAACTGATGCTGTCTTGCATGTAAATCTCTCCGTCCTGCTTTTTTATGCACATGTTGTTCATACTGTACATAAGtgtaaaaaatgaatattcttaAAATGTTTATGCACCTAaagttacacacacatacaatatactGCTTTTTGTTCGTTTTGGACACAACCAGCAAGctcatttatatgcatttattctaTTTTTGACCTATAAAATAAATTCTATGATGATTAAAGTTATAATACATTTGTGaacttaataataaaacattttcaaagatgttttgttcttttcatctgGACCTGTGtacaataattatattttaatataattattttatacaacagttctgtctgcttctcgaatgtgattggctaatagccgtgAGTAATCAACGCTCATAGAGTCTCTTCACCCCCTTACGTGTTACTCCACCCACATGACAAGCAGA
>TCONS_00027186
GTGACATATTAAAAACTCTTCATCCGTCTGTCAGCTCAGCAGCACAAACACAGAGCATTTCCCAGCCGTCAGTGGAGCCTTCATGGACTCTCCATACAACGGCAGCGCGTCCCTCCAGACCTCCACCTCTAACCTGAACACCAGCATCTCTCGGCCGgcggagcaggaggaggaggATTGAAAGAAGCACACAGCAGCCTACTACTAAAGGATGTCTGAATGAACGTCTGTGAAGAATTCGAGTTTTCGAGGACCTCAACAGAAACTCGACATTCAGTAGTGGACATCACTGACATCCAGAAAATATCAACAcatcagtccaaacacatgcgctgtaggtgaattgaacaaactaaattggccgaagtgtatttgtgtgtgtgtgaatgagtgtttatgagggtttcccagttctgggttgcagctggaagggcatccgctgtgtagaacatatgctggaataattggcggttcattccgctgtgacgacctctgattaataaggaactaagccgaaggaaagtgaatgaatgaatgagttaatcatttcccagggatgggttgcagctgtaaggccATCCACTGcgaaaaaacatgctggataagtcggcggttcattccattgtggccaccctggattaataaagagactaagctgaaagaaaatgaatgcatgaatcaaACTGCTGATTGGTGTGTGTAAAGAAAGAGAAGCTAATCTATCTGTcaatgtatgtattttatatagaAATGGAGATGGATGCActttatttaagaatttaatGACTTTAATTATGAGtttcattgtttattcattcgtATCATCATATGTGAGTGAACAATTATCCCCTGTTTGATCTGTACAATGTCTAATATGTGAACGGACATCACTAGATCATCAGATACACTCATATTTACatgtttaacagacatttaacagtGAATTCCCTGAGGAATCATCAGAAAACAGCATTGAGGAACACACAAACCACATCAGGCGACAGAAATGGAGGacaaaactgaaatgaaaaaggATGAGCTGCACTTTTTGATGAAGCATTGGGATGGAAATATAAATCTGGACAATTAGGCTCTTCATTATGTaaatattctgtcatttattaaaaaagaaatacattaaGTAAGCTGTCAGGAAGTGCATCAGAATATCTGTATACACAACTAATCTGACTAGAATTTATGCACGACTTATACAGCTCAATAAGTGTACTCGTTTACTGTTGATCATGccatttatttccttattttatcAACAGCACACATGACTTCATTGTTTTAAATAACTGATGCTGTCTTGCATGTAAATCTCTCCGTCCTGCTTTTTTATGCACATGTTGTTCATACTGTACATAAGtgtaaaaaatgaatattcttaAAATGTTTATGCACCTAaagttacacacacatacaatatactGCTTTTTGTTCGTTTTGGACACAACCAGCAAGctcatttatatgcatttattctaTTTTTGACCTATAAAATAAATTCTATGATGATTAAAGTTATAATACATTTGTGaacttaataataaaacattttcaaagatgttttgttcttttcatctgGACCTGTGtacaataattatattttaatataattattttatacaacagttctgtctgcttctcgaatgtgattggctaatagccgtgAGTAATCAACGCTCATAGAGTCTCTTCACCCCCTTACGTGTTACTCCACCCACATGACAAGCAGA
>TCONS_00027187
AGCATTTCCCAGCCGTCAGTGGAGCCTTCATGGACTCTCCATACAACGGCAGCGCGTCCCTCCAGACCTCCACCTCTAACCTGAACACCAGCATCTCTCGGCCGgcggagcaggaggaggagggcAAGTTCTCCAGTGACGCCATCTGGCTGTGGGTCGCCGTCATCGCCACCATCGGGAACATCGTGGTGGTCGCGGTGGTCTGCGCCTGTGCCTTTTAGACCCCGTAGTGCACAAGAACACAGCCTGAACTCCTGATCCCCCCTCACTAGCGCAATTGAAAGAAGCACACAGCAGCCTACTACTAAAGGATGTCTGAATGAACGTCTGTGAAGAATTCGAGTTTTCGAGGACCTCAACAGAAACTCGACATTCAGTAGTGGACATCACTGACATCCAGAAAATATCAACAcatcagtccaaacacatgcgctgtaggtgaattgaacaaactaaattggccgaagtgtatttgtgtgtgtgtgaatgagtgtttatgagggtttcccagttctgggttgcagctggaagggcatccgctgtgtagaacatatgctggaataattggcggttcattccgctgtgacgacctctgattaataaggaactaagccgaaggaaagtgaatgaatgaatgagttaatcatttcccagggatgggttgcagctgtaaggccATCCACTGcgaaaaaacatgctggataagtcggcggttcattccattgtggccaccctggattaataaagagactaagctgaaagaaaatgaatgcatgaatcaaACTGCTGATTGGTGTGTGTAAAGAAAGAGAAGCTAATCTATCTGTcaatgtatgtattttatatagaAATGGAGATGGATGCActttatttaagaatttaatGACTTTAATTATGAGtttcattgtttattcattcgtATCATCATATGTGAGTGAACAATTATCCCCTGTTTGATCTGTACAATGTCTAATATGTGAACGGACATCACTAGATCATCAGATACACTCATATTTACatgtttaacagacatttaacagtGAATTCCCTGAGGAATCATCAGAAAACAGCATTGAGGAACACACAAACCACATCAGGCGACAGAAATGGAGGacaaaactgaaatgaaaaaggATGAGCTGCACTTTTTGATGAAGCATTGGGATGGAAATATAAATCTGGACAATTAGGCTCTTCATTATGTaaatattctgtcatttattaaaaaagaaatacattaaGTAAGCTGTCAGGAAGTGCATCAGAATATCTGTATACACAACTAATCTGACTAGAATTTATGCACGACTTATACAGCTCAATAAGTGTACTCGTTTACTGTTGATCATGccatttatttccttattttatcAACAGCACACATGACTTCATTGTTTTAAATAACTGATGCTGTCTTGCATGTAAATCTCTCCGTCCTGCTTTTTTATGCACATGTTGTTCATACTGTACATAAGtgtaaaaaatgaatattcttaAAATGTTTATGCACCTAaagttacacacacatacaatatactGCTTTTTGTTCGTTTTGGACACAACCAGCAAGctcatttatatgcatttattctaTTTTTGACCTATAAAATAAATTCTATGATGATTAAAGTTATAATACATTTGTGaacttaataataaaacattttcaaagatgttttgttcttttcatctgGACCTGTGtacaataattatattttaatataattattttatacaacagttctgtctgcttctcgaatgtgattggctaatagccgtgAGTAATCAACGCTCATAGAGTCTCTTCACCCCCTTACGTGTTACTCCACCCACATGACAAGCAGA
>TCONS_00027188
atttctagtGACGTCACTGTTAAGGGAGGAGTTAGGTAAGTGCATtcaaaagcattggatgcagctcagattgcaccctcaccaagtctgcagccagaccccgtTCAAAGGAGGAGCTCAAGAAAAGCCCCTATAAATATTCTGTTTAATTGGAAATGAATAAGCATCACTTACAAATGACACAGACCTTAAATTTTATAGTTCAATGAGCAAAGATCAAGGTCCTGAAATGCAATTCAactatgtaaataaacaaaaacactcatATTCACTATATACAGTTGCAcatattttgttaatatagtGTAAAGCTGtctttaaatgctctgttctcaTCCGCCGCTCAGCTTTTCTCTGTGGTCAGGCTGACCGGTTCCTCTTTCAGGAGTTTGGCACGAGTGCTGTGCCGTGTTTCTGCCTGTAGTTTGGCTTCAGGAAGGCGGCGCAGCTCAGTGTCCTGCTTTTTATTGTCTGTGTGCTTGTCTGCGGGGTCAATGGAGACGCAGGTGTTCatcacacacgcaaacacacacacacacaccgcagtgCCTTAAACAACGCAACGCTAGCGATGATCTGAAATCACATTTTGGAGATTGAAAGAAGCACACAGCAGCCTACTACTAAAGGATGTCTGAATGAACGTCTGTGAAGAATTCGAGTTTTCGAGGACCTCAACAGAAACTCGACATTCAGTAGTGGACATCACTGACATCCAGAAAATATCAACAcatcagtccaaacacatgcgctgtagacatttaacagtGAATTCCCTGAGGAATCATCAGAAAACAGCATTGAGGAACACACAAACCACATCAGGCGACAGAAATGGAGGacaaaactgaaatgaaaaaggATGAGCTGCACTTTTTGATGAAGCATTGGGATGGAAATATAAATCTGGACAATTAGGCTCTTCATTATGTaaatattctgtcatttattaaaaaagaaatacattaaGTAAGCTGTCAGGAAGTGCATCAGAATATCTGTATACACAACTAATCTGACTAGAATTTATGCACGACTTATACAGCTCAATAAGTGTACTCGTTTACTGTTGATCATGccatttatttccttattttatcAACAGCACACATGACTTCATTGTTTTAAATAACTGATGCTGTCTTGCATGTAAATCTCTCCGTCCTGCTTTTTTATGCACATGTTGTTCATACTGTACATAAGtgtaaaaaatgaatattcttaAAATGTTTATGCACCTAaagttacacacacatacaatatactGCTTTTTGTTCGTTTTGGACACAACCAGCAAGctcatttatatgcatttattctaTTTTTGACCTATAAAATAAATTCTATGATGATTAAAGTTATAATACATTTGTGaacttaataataaaacattttcaaagatgttttgttcttttcatctgGACCTGTGtacaataattatattttaatataattattttatacaacagttctgtctgcttctcgaatgtgattggctaatagccgtgAGTAATCAACGCTCATAGAGTCTCTTCACCCCCTTACGTGTTACTCCACCCACATGACAAGCAGA

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0043010 camera-type eye development biological_process
GO:0009583 detection of light stimulus biological_process
GO:0009584 detection of visible light biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0036465 synaptic vesicle recycling biological_process
GO:0003008 system process biological_process
GO:0001654 eye development biological_process
GO:0140238 presynaptic endocytosis biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0150063 visual system development biological_process
GO:0031226 intrinsic component of plasma membrane cellular_component
GO:0042995 cell projection cellular_component
GO:0030141 secretory granule cellular_component
GO:0043005 neuron projection cellular_component
GO:0030424 axon cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0044459 obsolete plasma membrane part cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0045202 synapse cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0008427 calcium-dependent protein kinase inhibitor activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function
GO:0010858 calcium-dependent protein kinase regulator activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000092142

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026013 False 1742 lncRNA 0.40 3 49193824 49214852
TCONS_00027185 False 1598 lncRNA 0.36 2 49193865 49215023
TCONS_00027186 False 1745 lncRNA 0.38 3 49199290 49215023
TCONS_00027187 False 1845 lncRNA 0.40 2 49207132 49215023
TCONS_00027188 True 1573 lncRNA 0.38 3 49211154 49215023
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_013098 NA coding upstream 36872 49124765 ~ 49156952 (+)
XLOC_013097 SHKBP1 coding upstream 221148 48953963 ~ 48972676 (+)
XLOC_013096 FO681288.1 coding upstream 240822 48943875 ~ 48953002 (+)
XLOC_013095 ppp1r37 coding upstream 257823 48864367 ~ 48936001 (+)
XLOC_013094 bmp16 coding upstream 380828 48793536 ~ 48812996 (+)
XLOC_013100 si:ch211-136a13.1 coding downstream 10529 49225552 ~ 49247479 (+)
XLOC_013101 yif1b coding downstream 33366 49248389 ~ 49267856 (+)
XLOC_013102 CABZ01070258.1 coding downstream 67040 49282063 ~ 49359785 (+)
XLOC_013103 NA coding downstream 141434 49356457 ~ 49357485 (+)
XLOC_013104 si:cabz01090165.1 coding downstream 196394 49411417 ~ 49447042 (+)
XLOC_013090 NA non-coding upstream 636997 48523937 ~ 48556827 (+)
XLOC_013089 CR786562.2 non-coding upstream 755211 48438497 ~ 48438613 (+)
XLOC_013087 NA non-coding upstream 989570 48184059 ~ 48204254 (+)
XLOC_013085 CABZ01086755.1 non-coding upstream 1068936 47990791 ~ 48124888 (+)
XLOC_013105 NA non-coding downstream 691001 49906024 ~ 49913858 (+)
XLOC_013107 NA non-coding downstream 789711 50004734 ~ 50005794 (+)
XLOC_013108 NA non-coding downstream 829293 50044316 ~ 50046147 (+)

Expression

Expression of XLOC_013099(BX663503.1) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
End of interactive chart.

Expression of XLOC_013099(BX663503.1) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
End of interactive chart.

Co-expression Network