XLOC_013099 (BX663503.1)


Basic Information

Item Value
gene id XLOC_013099
gene name BX663503.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 49193824 ~ 49215023 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026013
CGAGGAGCGGaaaatacacacactcacacgcgaCAGGACGAGGATGGAGTTGTCACTAATGGCAGCGCAGCATTTCCCAGCCGTCAGTGGAGCCTTCATGGACTCTCCATACAACGGCAGCGCGTCCCTCCAGACCTCCACCTCTAACCTGAACACCAGCATCTCTCGGCCGgcggagcaggaggaggagggcAAGTTCTCCAGTGACGCCATCTGGCTGTGGGTCGCCGTCATCGCCACCATCGGGAACATCGTGGTGGTCGCGGTGGTCTGCGCCTGTGCCTTTTAGACCCCGTAGTGCACAAGAACACAGCCTGAACTCCTGATCCCCCCTCACTAGCGCAATTGAAAGAAGCACACAGCAGCCTACTACTAAAGGATGTCTGAATGAACGTCTGTGAAGAATTCGAGTTTTCGAGGACCTCAACAGAAACTCGACATTCAGTAGTGGACATCACTGACATCCAGAAAATATCAACAcatcagtccaaacacatgcgctgtaggtgaattgaacaaactaaattggccgaagtgtatttgtgtgtgtgtgaatgagtgtttatgagggtttcccagttctgggttgcagctggaagggcatccgctgtgtagaacatatgctggaataattggcggttcattccgctgtgacgacctctgattaataaggaactaagccgaaggaaagtgaatgaatgaatgagttaatcatttcccagggatgggttgcagctgtaaggccATCCACTGcgaaaaaacatgctggataagtcggcggttcattccattgtggccaccctggattaataaagagactaagctgaaagaaaatgaatgcatgaatcaaACTGCTGATTGGTGTGTGTAAAGAAAGAGAAGCTAATCTATCTGTcaatgtatgtattttatatagaAATGGAGATGGATGCActttatttaagaatttaatGACTTTAATTATGAGtttcattgtttattcattcgtATCATCATATGTGAGTGAACAATTATCCCCTGTTTGATCTGTACAATGTCTAATATGTGAACGGACATCACTAGATCATCAGATACACTCATATTTACatgtttaacagacatttaacagtGAATTCCCTGAGGAATCATCAGAAAACAGCATTGAGGAACACACAAACCACATCAGGCGACAGAAATGGAGGacaaaactgaaatgaaaaaggATGAGCTGCACTTTTTGATGAAGCATTGGGATGGAAATATAAATCTGGACAATTAGGCTCTTCATTATGTaaatattctgtcatttattaaaaaagaaatacattaaGTAAGCTGTCAGGAAGTGCATCAGAATATCTGTATACACAACTAATCTGACTAGAATTTATGCACGACTTATACAGCTCAATAAGTGTACTCGTTTACTGTTGATCATGccatttatttccttattttatcAACAGCACACATGACTTCATTGTTTTAAATAACTGATGCTGTCTTGCATGTAAATCTCTCCGTCCTGCTTTTTTATGCACATGTTGTTCATACTGTACATAAGtgtaaaaaatgaatattcttaAAATGTTTATGCACCTAaagttacacacacatacaatatactGCTTTTTGTTCGTTTTGGACACAACCAGCAAGctcatttatatgcatttattctaTTTTTGACCTATAAAATAAATTCTATGATGATTAAAGTTATAATACATTTGTGaacttaataataaaacattttcaaagat
>TCONS_00027185
GGATGGAGTTGTCACTAATGGCAGCGCAGATTGAAAGAAGCACACAGCAGCCTACTACTAAAGGATGTCTGAATGAACGTCTGTGAAGAATTCGAGTTTTCGAGGACCTCAACAGAAACTCGACATTCAGTAGTGGACATCACTGACATCCAGAAAATATCAACAcatcagtccaaacacatgcgctgtaggtgaattgaacaaactaaattggccgaagtgtatttgtgtgtgtgtgaatgagtgtttatgagggtttcccagttctgggttgcagctggaagggcatccgctgtgtagaacatatgctggaataattggcggttcattccgctgtgacgacctctgattaataaggaactaagccgaaggaaagtgaatgaatgaatgagttaatcatttcccagggatgggttgcagctgtaaggccATCCACTGcgaaaaaacatgctggataagtcggcggttcattccattgtggccaccctggattaataaagagactaagctgaaagaaaatgaatgcatgaatcaaACTGCTGATTGGTGTGTGTAAAGAAAGAGAAGCTAATCTATCTGTcaatgtatgtattttatatagaAATGGAGATGGATGCActttatttaagaatttaatGACTTTAATTATGAGtttcattgtttattcattcgtATCATCATATGTGAGTGAACAATTATCCCCTGTTTGATCTGTACAATGTCTAATATGTGAACGGACATCACTAGATCATCAGATACACTCATATTTACatgtttaacagacatttaacagtGAATTCCCTGAGGAATCATCAGAAAACAGCATTGAGGAACACACAAACCACATCAGGCGACAGAAATGGAGGacaaaactgaaatgaaaaaggATGAGCTGCACTTTTTGATGAAGCATTGGGATGGAAATATAAATCTGGACAATTAGGCTCTTCATTATGTaaatattctgtcatttattaaaaaagaaatacattaaGTAAGCTGTCAGGAAGTGCATCAGAATATCTGTATACACAACTAATCTGACTAGAATTTATGCACGACTTATACAGCTCAATAAGTGTACTCGTTTACTGTTGATCATGccatttatttccttattttatcAACAGCACACATGACTTCATTGTTTTAAATAACTGATGCTGTCTTGCATGTAAATCTCTCCGTCCTGCTTTTTTATGCACATGTTGTTCATACTGTACATAAGtgtaaaaaatgaatattcttaAAATGTTTATGCACCTAaagttacacacacatacaatatactGCTTTTTGTTCGTTTTGGACACAACCAGCAAGctcatttatatgcatttattctaTTTTTGACCTATAAAATAAATTCTATGATGATTAAAGTTATAATACATTTGTGaacttaataataaaacattttcaaagatgttttgttcttttcatctgGACCTGTGtacaataattatattttaatataattattttatacaacagttctgtctgcttctcgaatgtgattggctaatagccgtgAGTAATCAACGCTCATAGAGTCTCTTCACCCCCTTACGTGTTACTCCACCCACATGACAAGCAGA
>TCONS_00027186
GTGACATATTAAAAACTCTTCATCCGTCTGTCAGCTCAGCAGCACAAACACAGAGCATTTCCCAGCCGTCAGTGGAGCCTTCATGGACTCTCCATACAACGGCAGCGCGTCCCTCCAGACCTCCACCTCTAACCTGAACACCAGCATCTCTCGGCCGgcggagcaggaggaggaggATTGAAAGAAGCACACAGCAGCCTACTACTAAAGGATGTCTGAATGAACGTCTGTGAAGAATTCGAGTTTTCGAGGACCTCAACAGAAACTCGACATTCAGTAGTGGACATCACTGACATCCAGAAAATATCAACAcatcagtccaaacacatgcgctgtaggtgaattgaacaaactaaattggccgaagtgtatttgtgtgtgtgtgaatgagtgtttatgagggtttcccagttctgggttgcagctggaagggcatccgctgtgtagaacatatgctggaataattggcggttcattccgctgtgacgacctctgattaataaggaactaagccgaaggaaagtgaatgaatgaatgagttaatcatttcccagggatgggttgcagctgtaaggccATCCACTGcgaaaaaacatgctggataagtcggcggttcattccattgtggccaccctggattaataaagagactaagctgaaagaaaatgaatgcatgaatcaaACTGCTGATTGGTGTGTGTAAAGAAAGAGAAGCTAATCTATCTGTcaatgtatgtattttatatagaAATGGAGATGGATGCActttatttaagaatttaatGACTTTAATTATGAGtttcattgtttattcattcgtATCATCATATGTGAGTGAACAATTATCCCCTGTTTGATCTGTACAATGTCTAATATGTGAACGGACATCACTAGATCATCAGATACACTCATATTTACatgtttaacagacatttaacagtGAATTCCCTGAGGAATCATCAGAAAACAGCATTGAGGAACACACAAACCACATCAGGCGACAGAAATGGAGGacaaaactgaaatgaaaaaggATGAGCTGCACTTTTTGATGAAGCATTGGGATGGAAATATAAATCTGGACAATTAGGCTCTTCATTATGTaaatattctgtcatttattaaaaaagaaatacattaaGTAAGCTGTCAGGAAGTGCATCAGAATATCTGTATACACAACTAATCTGACTAGAATTTATGCACGACTTATACAGCTCAATAAGTGTACTCGTTTACTGTTGATCATGccatttatttccttattttatcAACAGCACACATGACTTCATTGTTTTAAATAACTGATGCTGTCTTGCATGTAAATCTCTCCGTCCTGCTTTTTTATGCACATGTTGTTCATACTGTACATAAGtgtaaaaaatgaatattcttaAAATGTTTATGCACCTAaagttacacacacatacaatatactGCTTTTTGTTCGTTTTGGACACAACCAGCAAGctcatttatatgcatttattctaTTTTTGACCTATAAAATAAATTCTATGATGATTAAAGTTATAATACATTTGTGaacttaataataaaacattttcaaagatgttttgttcttttcatctgGACCTGTGtacaataattatattttaatataattattttatacaacagttctgtctgcttctcgaatgtgattggctaatagccgtgAGTAATCAACGCTCATAGAGTCTCTTCACCCCCTTACGTGTTACTCCACCCACATGACAAGCAGA
>TCONS_00027187
AGCATTTCCCAGCCGTCAGTGGAGCCTTCATGGACTCTCCATACAACGGCAGCGCGTCCCTCCAGACCTCCACCTCTAACCTGAACACCAGCATCTCTCGGCCGgcggagcaggaggaggagggcAAGTTCTCCAGTGACGCCATCTGGCTGTGGGTCGCCGTCATCGCCACCATCGGGAACATCGTGGTGGTCGCGGTGGTCTGCGCCTGTGCCTTTTAGACCCCGTAGTGCACAAGAACACAGCCTGAACTCCTGATCCCCCCTCACTAGCGCAATTGAAAGAAGCACACAGCAGCCTACTACTAAAGGATGTCTGAATGAACGTCTGTGAAGAATTCGAGTTTTCGAGGACCTCAACAGAAACTCGACATTCAGTAGTGGACATCACTGACATCCAGAAAATATCAACAcatcagtccaaacacatgcgctgtaggtgaattgaacaaactaaattggccgaagtgtatttgtgtgtgtgtgaatgagtgtttatgagggtttcccagttctgggttgcagctggaagggcatccgctgtgtagaacatatgctggaataattggcggttcattccgctgtgacgacctctgattaataaggaactaagccgaaggaaagtgaatgaatgaatgagttaatcatttcccagggatgggttgcagctgtaaggccATCCACTGcgaaaaaacatgctggataagtcggcggttcattccattgtggccaccctggattaataaagagactaagctgaaagaaaatgaatgcatgaatcaaACTGCTGATTGGTGTGTGTAAAGAAAGAGAAGCTAATCTATCTGTcaatgtatgtattttatatagaAATGGAGATGGATGCActttatttaagaatttaatGACTTTAATTATGAGtttcattgtttattcattcgtATCATCATATGTGAGTGAACAATTATCCCCTGTTTGATCTGTACAATGTCTAATATGTGAACGGACATCACTAGATCATCAGATACACTCATATTTACatgtttaacagacatttaacagtGAATTCCCTGAGGAATCATCAGAAAACAGCATTGAGGAACACACAAACCACATCAGGCGACAGAAATGGAGGacaaaactgaaatgaaaaaggATGAGCTGCACTTTTTGATGAAGCATTGGGATGGAAATATAAATCTGGACAATTAGGCTCTTCATTATGTaaatattctgtcatttattaaaaaagaaatacattaaGTAAGCTGTCAGGAAGTGCATCAGAATATCTGTATACACAACTAATCTGACTAGAATTTATGCACGACTTATACAGCTCAATAAGTGTACTCGTTTACTGTTGATCATGccatttatttccttattttatcAACAGCACACATGACTTCATTGTTTTAAATAACTGATGCTGTCTTGCATGTAAATCTCTCCGTCCTGCTTTTTTATGCACATGTTGTTCATACTGTACATAAGtgtaaaaaatgaatattcttaAAATGTTTATGCACCTAaagttacacacacatacaatatactGCTTTTTGTTCGTTTTGGACACAACCAGCAAGctcatttatatgcatttattctaTTTTTGACCTATAAAATAAATTCTATGATGATTAAAGTTATAATACATTTGTGaacttaataataaaacattttcaaagatgttttgttcttttcatctgGACCTGTGtacaataattatattttaatataattattttatacaacagttctgtctgcttctcgaatgtgattggctaatagccgtgAGTAATCAACGCTCATAGAGTCTCTTCACCCCCTTACGTGTTACTCCACCCACATGACAAGCAGA
>TCONS_00027188
atttctagtGACGTCACTGTTAAGGGAGGAGTTAGGTAAGTGCATtcaaaagcattggatgcagctcagattgcaccctcaccaagtctgcagccagaccccgtTCAAAGGAGGAGCTCAAGAAAAGCCCCTATAAATATTCTGTTTAATTGGAAATGAATAAGCATCACTTACAAATGACACAGACCTTAAATTTTATAGTTCAATGAGCAAAGATCAAGGTCCTGAAATGCAATTCAactatgtaaataaacaaaaacactcatATTCACTATATACAGTTGCAcatattttgttaatatagtGTAAAGCTGtctttaaatgctctgttctcaTCCGCCGCTCAGCTTTTCTCTGTGGTCAGGCTGACCGGTTCCTCTTTCAGGAGTTTGGCACGAGTGCTGTGCCGTGTTTCTGCCTGTAGTTTGGCTTCAGGAAGGCGGCGCAGCTCAGTGTCCTGCTTTTTATTGTCTGTGTGCTTGTCTGCGGGGTCAATGGAGACGCAGGTGTTCatcacacacgcaaacacacacacacacaccgcagtgCCTTAAACAACGCAACGCTAGCGATGATCTGAAATCACATTTTGGAGATTGAAAGAAGCACACAGCAGCCTACTACTAAAGGATGTCTGAATGAACGTCTGTGAAGAATTCGAGTTTTCGAGGACCTCAACAGAAACTCGACATTCAGTAGTGGACATCACTGACATCCAGAAAATATCAACAcatcagtccaaacacatgcgctgtagacatttaacagtGAATTCCCTGAGGAATCATCAGAAAACAGCATTGAGGAACACACAAACCACATCAGGCGACAGAAATGGAGGacaaaactgaaatgaaaaaggATGAGCTGCACTTTTTGATGAAGCATTGGGATGGAAATATAAATCTGGACAATTAGGCTCTTCATTATGTaaatattctgtcatttattaaaaaagaaatacattaaGTAAGCTGTCAGGAAGTGCATCAGAATATCTGTATACACAACTAATCTGACTAGAATTTATGCACGACTTATACAGCTCAATAAGTGTACTCGTTTACTGTTGATCATGccatttatttccttattttatcAACAGCACACATGACTTCATTGTTTTAAATAACTGATGCTGTCTTGCATGTAAATCTCTCCGTCCTGCTTTTTTATGCACATGTTGTTCATACTGTACATAAGtgtaaaaaatgaatattcttaAAATGTTTATGCACCTAaagttacacacacatacaatatactGCTTTTTGTTCGTTTTGGACACAACCAGCAAGctcatttatatgcatttattctaTTTTTGACCTATAAAATAAATTCTATGATGATTAAAGTTATAATACATTTGTGaacttaataataaaacattttcaaagatgttttgttcttttcatctgGACCTGTGtacaataattatattttaatataattattttatacaacagttctgtctgcttctcgaatgtgattggctaatagccgtgAGTAATCAACGCTCATAGAGTCTCTTCACCCCCTTACGTGTTACTCCACCCACATGACAAGCAGA

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0043010 camera-type eye development biological_process
GO:0009583 detection of light stimulus biological_process
GO:0009584 detection of visible light biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0036465 synaptic vesicle recycling biological_process
GO:0003008 system process biological_process
GO:0001654 eye development biological_process
GO:0140238 presynaptic endocytosis biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0150063 visual system development biological_process
GO:0031226 intrinsic component of plasma membrane cellular_component
GO:0042995 cell projection cellular_component
GO:0030141 secretory granule cellular_component
GO:0043005 neuron projection cellular_component
GO:0030424 axon cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0044459 obsolete plasma membrane part cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0045202 synapse cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0008427 calcium-dependent protein kinase inhibitor activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function
GO:0010858 calcium-dependent protein kinase regulator activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000092142

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026013 False 1742 lncRNA 0.40 3 49193824 49214852
TCONS_00027185 False 1598 lncRNA 0.36 2 49193865 49215023
TCONS_00027186 False 1745 lncRNA 0.38 3 49199290 49215023
TCONS_00027187 False 1845 lncRNA 0.40 2 49207132 49215023
TCONS_00027188 True 1573 lncRNA 0.38 3 49211154 49215023

Neighbor

gene id symbol gene type direction distance location
XLOC_013098 NA coding upstream 36872 49124765 ~ 49156952 (+)
XLOC_013097 SHKBP1 coding upstream 221148 48953963 ~ 48972676 (+)
XLOC_013096 FO681288.1 coding upstream 240822 48943875 ~ 48953002 (+)
XLOC_013095 ppp1r37 coding upstream 257823 48864367 ~ 48936001 (+)
XLOC_013094 bmp16 coding upstream 380828 48793536 ~ 48812996 (+)
XLOC_013100 si:ch211-136a13.1 coding downstream 10529 49225552 ~ 49247479 (+)
XLOC_013101 yif1b coding downstream 33366 49248389 ~ 49267856 (+)
XLOC_013102 CABZ01070258.1 coding downstream 67040 49282063 ~ 49359785 (+)
XLOC_013103 NA coding downstream 141434 49356457 ~ 49357485 (+)
XLOC_013104 si:cabz01090165.1 coding downstream 196394 49411417 ~ 49447042 (+)
XLOC_013090 NA non-coding upstream 636997 48523937 ~ 48556827 (+)
XLOC_013089 CR786562.2 non-coding upstream 755211 48438497 ~ 48438613 (+)
XLOC_013087 NA non-coding upstream 989570 48184059 ~ 48204254 (+)
XLOC_013085 CABZ01086755.1 non-coding upstream 1068936 47990791 ~ 48124888 (+)
XLOC_013105 NA non-coding downstream 691001 49906024 ~ 49913858 (+)
XLOC_013107 NA non-coding downstream 789711 50004734 ~ 50005794 (+)
XLOC_013108 NA non-coding downstream 829293 50044316 ~ 50046147 (+)

Expression


Co-expression Network