XLOC_013100 (si:ch211-136a13.1)


Basic Information

Item Value
gene id XLOC_013100
gene name si:ch211-136a13.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 49225552 ~ 49247479 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026014
CACCCGCAGTGCCTGGACTACAAGCCCCCATTCCAGCCACTCGAACCCCTGCTCTTTTGCAAGGAATATGCCAAGTTTGGGTGCTGTGATCTGGAGCGGGACCAGCAGATCTCCCGCCGCTTCCACCACATCATGGATTACTTCGATCACACGGGATTCACGGCCTGTGGGAAATACATCCGCAGTATACTGTGCCAGGAATGCTCTCCATATTCTGCACATCTGTACGACGCAGAAGACGCAAACACACCGATGCGCGAGCTGCCAGGCCTCTGCGGAAACTACTGCAATGATTATTGGCTCCACTGTCGATACACGCTCAGCCTCCTGACCAATAACAACAACACTTACGCTATTGAAGAAGACCGAGGCAAGTTCTGCAAATACCTGGAGCTGAAGGATCCCGAGTACTGTTACCCAAACGTACTCTCCAACGATGAGCTCAACGCAAATCTGGGAGACGTCAAGGCGGATCCGCAAGGGTGCATTCAGTTATGCCTTGAAGAAGTGGCTAACGGGCTACGCAATCCAGTAGCGATGGTGCACGCTAATGATGGTACGCATCGGTTCTTTGTGGCCGAGCAGCTGGGTTTTGTGTGGACTTACTTGCCGAATGGTTCTCGGATTGACAGGCCGTTCCTGAACCTGACCCGGGCCGTTCTGACATCGCCGTGGGCTGGAGATGAGCGTGGATTTCTCTGTATCGCTCTGCATCCGCAATTCGCCAAGGTGAAAAAGGTCTACGTTTACTACTCGGTGTCTGTGAAGAGGCAGGAGAAGATCCGCATCAGTGAGTTCACCGTGTCCGAATCGGATATGAATATGCTGGATCACTCCTCAGAAAGGACACTTCTAGAAGTCGATGAGCCGGCATCAAACCACAACGGAGGCCAGTTACTGTTTGGGTTGGACGGATATCTGTACATATTCATAGGAGACGGAGGAAAAGCGGGAGACCCTTTCGGAAAGTTTGGCAATTCTCAAAACAAGTGTACTCTTCTAGGCAAAGCCCTGCGGATTGACGTGGACAACAATGACTTTGGCGCCCCCTACAGCATCCCACCAGACAACCCGTTTGTGGGAGAAGCAGAGTCCAGGCCTGAGATCTACGCCTATGGCGTGAGGAACATGTGGAGATGCTCTGTGGACAGAGGAGATGCGCTCAGTGGACGAGGACGGGGACGGATGTTCTGTGGAGACGTGGGACAGAACAAATACGAGGAGGTGGATCTGATTGAAAAAGGAGGGAATTATGGGTGGAGAGCCAAAGAGGGATTCTCCTGTTACGACAACAAGCTCTGCCATAATTCATCACTCGATGACATCCTTCCGATTTTTGCTTACCCTCATAAAATTGGGAAGTCTGTAACGGGCGGCTACATCTACAGAGGCTGCCAGATGCCCAATCTCAATGGTCTGTATATCTTTGGGGACTTTATGAGTGGGCGACTGATGTCCCTAAAGGAGAATCCCGAGACTGGAAAATGGAGCTATAAGGAGATTTGCATGGGCAACGACAAAACCTGCAGTTTCCCCAAGCTCATAAACAGCTACTACAAGTACATTATATCATTCGGTGAAGACGAGGCCGGTGAGCTCTACTTTCTTGCTACAGGAGCAGCTAGTGCGACAGCCAGAGCTGGAGTGGTGTATAAAATAGTGGATCCATCGAgGAGGGCTCCTCCGGGAAAATGCAGCTTCAAGCCTAGTCCAGTCAACATAAAGGGCAAGCTGATTCACTTCAGTCCCAAAGAAGagtttgtgatcaACAAAAAACCCTCCACAACACCTGCACCCAAACCAAAACCCCCCAAACCCAGCACAACCTCTCGTCcccaaacaacaacaaccacccgCAGGACTCCTCCAGCGCCCACCGTCCGACCCCGAGTCCACCACACAAAACCTCCATCCCCGACCACAGCCCGACCAACATACTGGACCACAGCTCCCAGAACCACCGCAAAAACCCAAACCAGCAGACCAACCAAACGAGGACGGGGCAAACCCAGGAGGAAAGGAGACCGGCGGGGGCGTCCTCGGGCCGGGACGGTGAGAATAGTCAGCGCAGATTTACGGAAAGATCGCGGGCGGGTGGAGATATTTGTGCGTGGGGAATGGGGGACGGTGTGCGACGACTTGTTTAACATCCAGGCGGCGGCGGTGGTCTGCAGGCAGATGGGCTTTCCGGTGGCTGTACGAGTGGCCAAAAGAGCCGAATTCGGGGCTGGGGGTCTCGGCGTCAGGATTATGCTGGACGATGTGGAGTGTGAAGGAACAGAACGCACTTTACTGCACTGCAAACACGCCAAACTGGGCAAAAACAACTGCTCTCACGATGAGGACGTCGGGGTGGTGTGTGGACACTATGAACATGCAGTTGAGTGAATGGGTGGTGATGAGTTTCCATGCAGATTTAtgagattttgtcttgtttcttgtttaaatatctacaaattcttgcATCAATAcgcattttctagacgagcaaaaaGCGTCTTGTTTTCAGCCTTTAGGTGGAAACATTACTAGCGTTGAGCAGATGCAGGTTGTGATGgagggttgccaggttttcacaacaaaacTAAACCAATGGTCCGCCACTGGAAACTGTttgaatatattataaaatgatgacctacacttcctgacaaaagcaTCCATGTTTAAGAACAAtaaataagttgacttctagttgatcatttggtatcagaagtgtctctatgaaaggtaaaggcctctagattttgcttatttgagcacaataaaatctgatcatgccttgattattaatgattgcattaggacagtaagctctgactttactcatcactgaacagaaataatgtccagtatagaatataaagtcctgctgcagtggagacagaatgaatattgtgtctgactccatcatgagcttggaggactgcatccatacatctctgacatgactcacatcactgattaataaagtcatctggaacggcaaagaaagcgaGAGTtcatcccagagttcatcaagagtctttgtgttcatcttcaacgcctcctccttcatcttacctcagacatgctcaataatgttcatgtctggtgactgggctggccaatcctgtagcagcttgaccttctctgctttcaggagctttgatgtggaggctgaagtatgaggagcgctatcctgctggagaattgtccctctcctgtggtttgtaatgtaatgggcagcacagatgtcttgatacctcaggctgttgatgttgcagatctctcgcacgcccccatactgaatgtagaccccaaaccatgatgtttccttcaccaaacttgactgatttctgtgagaatcttgtgtccatgctggttccagtaggtcttctgcagtatttgtgatgcagaTCAACATAAATCAgcctaaatgatcaactagagtcaagttattatttgttgctcttacaactgggatccacgacaagactttagtcaggtagtgcgTTATCAAATTATGGGAAATTAGGAAGAAATGCCCCATCACAACCATATAAGAGTCTGTGTTTTTGAATGTAGACTATTATATACAAagctaaactgtaaaaatatgattCACTTGTAAAACCAATCAACCAAActatcatttaaaaacaacaacaacaacccttTTCTCATGAATCGTGCACTGTTTACACTGCTGTGAGTTGTTGACCATCTCACACAACCAagatacaattattattaagatgttttaatttacaccaggggtgtccacactcggtcctggagggccggtgtcctggagaatttagctccaaccctaatcaagcacacctaaaccagctaatccagctcttactaggtatactagaaacttccaggcaggtgtgttgaaggaaggtgtgttggagctaagatcagcaggacaccagccctccaggactgactttggacaTCCCTGATTTACACAGTggctcagcaagaaggtcgctggtttgagtcccggctgagtcagttggtatttctgtgtggagtttgcatgttctccccgtgttggcgtgggttaactccggtttcccctacagtctaaacatatgcgctataggggaattgaactaAATTGCTCGTAGtgtatcccagtactgggttgcagctggaagggcatccactgcgtaaaacatatgctggaatagttggtggttcatgccactttggcaacccctgataaataaagggactaagccgaaggaaaatcaatgaatactTTCTGTATCCTTATAAATTAAGTATATTCATTTAGCAATCACGAGGTCAAGTCTTTCCCATTGAGTCTTTTTCAAATGATTCAGGTTATTGGCATGTAAATATTGCATTCTGTTGCACATATACATTTCTAATTCCAAATGATTGTCTTTCTTAAACAAATGCTGGACATTCTTTGTTATAGtgtaaagtgtaaataaaatgGTTTGCAATCTT

Function

symbol description
si:ch211-136a13.1 Predicted to enable catalytic activity and scavenger receptor activity. Predicted to be located in membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0003824 catalytic activity molecular_function
GO:0005044 scavenger receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050419-214 Predicted to enable catalytic activity and scavenger receptor activity. Predicted to be located in membrane.

Ensembl:

ensembl_id ENSDARG00000060927

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026014 True 4470 mRNA 0.47 9 49225552 49247479
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Neighbor

gene id symbol gene type direction distance location
XLOC_013099 BX663503.1 coding upstream 10529 49193824 ~ 49215023 (+)
XLOC_013098 NA coding upstream 68600 49124765 ~ 49156952 (+)
XLOC_013097 SHKBP1 coding upstream 252876 48953963 ~ 48972676 (+)
XLOC_013096 FO681288.1 coding upstream 272550 48943875 ~ 48953002 (+)
XLOC_013095 ppp1r37 coding upstream 289551 48864367 ~ 48936001 (+)
XLOC_013101 yif1b coding downstream 910 49248389 ~ 49267856 (+)
XLOC_013102 CABZ01070258.1 coding downstream 34584 49282063 ~ 49359785 (+)
XLOC_013103 NA coding downstream 108978 49356457 ~ 49357485 (+)
XLOC_013104 si:cabz01090165.1 coding downstream 163938 49411417 ~ 49447042 (+)
XLOC_013105 NA coding downstream 658545 49906024 ~ 49913858 (+)
XLOC_013090 NA non-coding upstream 668725 48523937 ~ 48556827 (+)
XLOC_013089 CR786562.2 non-coding upstream 786939 48438497 ~ 48438613 (+)
XLOC_013087 NA non-coding upstream 1021298 48184059 ~ 48204254 (+)
XLOC_013107 NA non-coding downstream 757255 50004734 ~ 50005794 (+)
XLOC_013108 NA non-coding downstream 796837 50044316 ~ 50046147 (+)

Expression

Expression of XLOC_013100(si:ch211-136a13.1) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15.
End of interactive chart.

Expression of XLOC_013100(si:ch211-136a13.1) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000028_00137862_00152223 NA coding CI01000028 null 137862 ~ 152223 (-)