XLOC_013102 (CABZ01070258.1)


Basic Information

Item Value
gene id XLOC_013102
gene name CABZ01070258.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 49282063 ~ 49359785 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026018
TAGTCATTCagctaataaaatattaaattatattaattaaacatgTTTTCTCATATCCCTATAGTCATTCAGCTAATAAAAATGGCAGGTTAAATTGTTGGGTAGGCTATATATTTTAGGTTAGTTTCCGACACTGTAACTGTAACTTTAACCCAATTCAACCCTTTAAAATGATGTAATAATACGCGTATGTGGGCATTATTTTACACACCCCAGCCTATATGCATAGGATAttaatatataatcaaaatataaagATAGATCTGCGCTTCATCCAGACGCACGCACTTCATAACGGTTCTGCTTCCTCCATTCTCAGGCTGCTAGACACATCTATTCTCTCACAGTTTTGTCACATTAGACTGTTCGTAAATAAAGCCATGATGTATGTAATCCTCCAAGTCATGGATATGGGTTTGTAATCAtagatgtatttttaaattagagCAGAAGAGGCATAAATAGAAACCGAAAGTAACTACAGTGGATTAACGGGGTTTGTTTATACTGGGTTACAAGACTTTTATGGGAAAGAAGAAATCGTCAGTCAAAATGTGGGTATTGTGCCCAGCAGGCCTGAATAACTCCTTTTGAGACCCGCGTCAAAGGCCAGAAAGAGAAGATGGAGGAGATTGCACATCGATGGGCTGCTGGAGCCGTCATTATTGTCCCGTCTCATCATGATCAGATATCTGTCATCTCACCACAAGATGAACACAAGGCCCTTCTGTTCCATTTAGCAGAGCTCTTTATGACAGGCCTCAACAAAGGCAGCGACGTGTGCAAAAACACACAGCTCTGGTGCttcttgtgtctgtgtgtgtgtgtgttcatgctccAGTGACACACACTGAGTCGGCGGCACAAAACCTGCGGCCCCTGGAAACCCTGCAGAGGAGGAGATCATGACCCCTGACAGCTGCCCCGCTACAgcctccatcatcatcatcagggtTTATGTAGGATTGCATGGGAAACTGGGACTATACTATATTTGTAAGGTCTTATTTTATAGTTCTGGCTTATTCTCTGCAGTTTTTAGTTTGTATCTCACAATGAACTGTGAAGactgttatgatgcatttaattgttaaattggtatttttattaaaaggaaaaaacacaggAGACTTCTGTGTATTTCTTGCTTGAATGACCG
>TCONS_00027189
GTTCACTCAGAACAACGGCTGTACACTCGCTGACAGAGCAAAACATTATAAGTATTGTGCCCAGCAGGCCTGAATAACTCCTTTTGAGACCCGCGTCAAAGGCCAGAAAGAGAAGATGGAGGAGATTGCACATCGATGGGCTGCTGGAGCCGTCATTATTGTCCCGTCTCATCATGATCAGATATCTGTCATCTCACCACAAGATGAACACAAGGCCCTTCTGTTCCATTTAGCAGAGCTCTTTATGACAGGCCTCAACAAAGGCAGCGACGTGTGCAAAAACACACAGCTCTGGTGCttcttgtgtctgtgtgtgtgtgtgttcatgctccAGTGACACACACTGAGTCGGCGGCACAAAACCTGCGGCCCCTGGAAACCCTGCAGAGGAGGAGATCATGACCCCTGACAGCTGCCCCGCTACAgcctccatcatcatcatcagggtTTATGTAGGATTGCATGGGAAACTGGGACTATACTATATTTGTAAGGTCTTATTTTATAGTTCTGGCTTATTCTCTGCAGTTTTTAGTTTGTATCTCACAATGAACTGTGAAGactgttatgatgcatttaattgttaaattggtatttttattaaaaggaaaaaacac
>TCONS_00027190
GTGCCCAGCAGGCCTGAATAACTCCTTTTGAGACCCGCGTCAAAGGCCAGAAAGAGAAGATGGAGGAGATTGCACATCGATGGGCTGCTGGAGCCGTCATTATTGTCCCGTCTCATCATGATCAGATATCTGTCATCTCACCACAAGATGAACACAAGGCCCTTCTGTTCCATTTAGCAGAGCTCTTTATGACAGTGACACACACTGAGTCGGCGGCACAAAACCTGCGGCCCCTGGAAACCCTGCAGAGGAGGAGATCATGACCCCTGACAGCTGCCCCGCTACAgcctccatcatcatcatcagggtTTATGTAGGATTGCATGGGAAACTGGGACTATACTATATTTGTAAGGTCTTATTTTATAGTTCTGGCTTATTCTCTGCAGTTTTTAGTTTGTATCTCACAATGAACTGTGAAGactgttatgatgcatttaattgttaaattggtatttttattaaaaggaaaaaacac
>TCONS_00027191
CTGAATAACTCCTTTTGAGACCCGCGTCAAAGGCCAGAAAGAGAAGATGGAGGAGATTGCACATCGATGGGCTGCTGGAGCCGTCATTATTGTCCCGTCTCATCATGATCAGATATCTGTCATCTCACCACAAGATGAACACAAGGCCCTTCTGTTCCATTTAGCAGAGCTCTTTATGACAGCTTGTTTGGATCAGTTTCAGTCTGAAGAGCTCATTAATAT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000105687

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026018 False 1159 lncRNA 0.40 4 49282063 49359785
TCONS_00027189 False 617 lncRNA 0.45 4 49285561 49359750
TCONS_00027190 False 478 lncRNA 0.45 3 49324933 49359750
TCONS_00027191 True 222 lncRNA 0.45 3 49324946 49359354

Neighbor

gene id symbol gene type direction distance location
XLOC_013101 yif1b coding upstream 14207 49248389 ~ 49267856 (+)
XLOC_013100 si:ch211-136a13.1 coding upstream 34584 49225552 ~ 49247479 (+)
XLOC_013099 BX663503.1 coding upstream 67040 49193824 ~ 49215023 (+)
XLOC_013098 NA coding upstream 125111 49124765 ~ 49156952 (+)
XLOC_013097 SHKBP1 coding upstream 309387 48953963 ~ 48972676 (+)
XLOC_013104 si:cabz01090165.1 coding downstream 51632 49411417 ~ 49447042 (+)
XLOC_013105 NA coding downstream 546239 49906024 ~ 49913858 (+)
XLOC_013106 mob2b coding downstream 609783 49969568 ~ 50040161 (+)
XLOC_013107 NA coding downstream 644949 50004734 ~ 50005794 (+)
XLOC_013108 NA coding downstream 684531 50044316 ~ 50046147 (+)
XLOC_013090 NA non-coding upstream 725236 48523937 ~ 48556827 (+)
XLOC_013089 CR786562.2 non-coding upstream 843450 48438497 ~ 48438613 (+)
XLOC_013087 NA non-coding upstream 1077809 48184059 ~ 48204254 (+)
XLOC_013110 NA non-coding downstream 767704 50127489 ~ 50127777 (+)
XLOC_013113 NA non-coding downstream 1129493 50489278 ~ 50490440 (+)

Expression


Co-expression Network