XLOC_013104 (si:cabz01090165.1)


Basic Information

Item Value
gene id XLOC_013104
gene name si:cabz01090165.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 49411417 ~ 49447042 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026019
TCCTGCAGGAGTGTGTCCTCCATGGAGCGTGtgctgctgctgtgtgtgtgcgtgttctgcgcgtcctcctcctcctccgccaTGCTGTGCCCCAAACGCTGCACCTGCCAGAACCTGCTGCCCTCCTACACCGTGCTCTGCGCCAAAACCGGCCTGCTCTTCGTGCCGCCCAACATCGACCGGCAGACGGCGGAGCTGCGTCTGATGGACAACTTCATCACCAGCCTGCGCCACCGAGACTTCGCCAACATGAGCAGCCTGATCCACCTCACACTCTCCCGAAACACCATCAGCCAGATCCGACCCTACGCATTCGCAGACCTCCAGGATCTACACGCATTGCATCTGGACGCAAACCGGCTGACGGTTCTAGATGACACACACTTACAAGGCCTGGTTAATCTCCGCCATCTAATACTAGCCAACAATCAAATCCACAGCATCTCAGAAGGAGCCTTTCAGGACTTCCTGGAAACTCTTGAAGATCTCGATCTGTCGTATAATAATCTGGTGGACTTACCGTGGGACACCATTGCGATGCTAGCCAGCGTCAACACCTTGAGTTTGGATCATAACCTGATTGAGTTCGTTCCTGAGGGGATATTTTCAAATCTGCATAAACTAGCTAGACTTGATATGACGTCCAATAAGCTGAAGAAGATTCCTCCGGATCCTTTATTTCTGCGTATTCCTGTATACGCCAAGATGAAGGGATCACCGCTGACCGCACTGGTGCTCAGTTTCGGGGGGAATCCGTTGCATTGTAATTGCGAGTTGGTTTGGTTGAGACGTCTTACTCGTGAGGATGATCTGGAGACCTGTGCATCTCCGAGAGAGCTTGCTGGGAAGTATTTCTGGACGATTCGGGAGGAGGAGTTTGTTTGCGAGCCGCCGATGATCACTCGACACACTTCTAAGATGTTTGTGATGGAGGGTCAGGAGGTCAGCCTGCGCTGTCGGTCCGTCGGCGACCCTGAACCCATCGTGCATTGGATCAGTCCTGATGGGAAGCTAATCGCTAACACTTCACGTACAGTATGCTATGATAACGGCTCTCTGGATATCCTGACCGCCACAGTGAAGGATTCTGGCGTGTTTACATGCATCGCTTCTAATGCAGCCGGTGAGGCTACGGCGCCGGTGGAGTTGGTTGTGAATCCTTCACCGCATTATGATCCCAAACTGGAGCCTGAGCCGGGACCCTCGGATATGCCCACGTCTATAAAGTCCAACAGCAGCGGCAGCGGAGGGCAGAATCGAGCTGATCAGCGGGTCACGGTTTCAGAAATTACGCCCAGCTCTGCTATGATCCGCTGGCCTCCACAAAGCCAGATTCCTGGAGTGCGCATGTACCAGGTCCAGTACAACAGCTCCACTGATGACATCCTCATCTACAGaaTGATTCCTGCTTCCCACAAGCGCTTCTTGCTGAGCGATCTGGCCTCGTCCCGTGACTACGAGCTCTGCGTTCTGGCCGTGTATGACGACGGGATCACGTCTCTAACCGCCACACGAATGGTCGGCTGCATATCATTCACCACAGAGCGTGAATTTCGCCACTGCCGCTCCATCCACGATCAATTCCTCGGCGGCACCATGATCATCGTCATCGGCGGCATCATCGTAGCGTCAGTCCTCGTCTTCATCTTTATCCTGCTGATGAAATATAAACTCCACAGCCAGCATTACAAGCAGAAAGCAGCCCGGGTTAGTAATGTTTGCTCCCAGACCAACGGTGGCCAGCAGGGGGCGACATCCGGTCCTCCGCCACGCTCGTCTTCTGGATCCGCTAATAAACCATCCGTCCCGCTGGGGTCCGAAAGACAAGAAGGATCCCATGGAATGGAGGGAGGATACGGGGCTCTGAGAGGAACCACGGTGGTGGACTTAAACCCAGAATATGGGAAATCCGTCAAAGAGGACGACTCCATATCGCAATAACACAGGGCTCGGTCCCACCTCCCTTCCCATTCTCTTCACTCCACACAActtattctgttttgtttttgtttccggCGTCCTGCGGCCTTACTGGGGGTTTTCTCCTGTCCAAG
>TCONS_00026020
TCCTGCAGGAGTGTGTCCTCCATGGAGCGTGtgctgctgctgtgtgtgtgcgtgttctgcgcgtcctcctcctcctccgccaTGCTGTGCCCCAAACGCTGCACCTGCCAGAACCTGCTGCCCTCCTACACCGTGCTCTGCGCCAAAACCGGCCTGCTCTTCGTGCCGCCCAACATCGACCGGCAGACGGCGGAGCTGCGTCTGATGGACAACTTCATCACCAGCCTGCGCCACCGAGACTTCGCCAACATGAGCAGCCTGATCCACCTCACACTCTCCCGAAACACCATCAGCCAGATCCGACCCTACGCATTCGCAGACCTCCAGGATCTACACGCATTGCATCTGGACGCAAACCGGCTGACGGTTCTAGATGACACACACTTACAAGGCCTGGTTAATCTCCGCCATCTAATACTAGCCAACAATCAAATCCACAGCATCTCAGAAGGAGCCTTTCAGGACTTCCTGGAAACTCTTGAAGATCTCGATCTGTCGTATAATAATCTGGTGGACTTACCGTGGGACACCATTGCGATGCTAGCCAGCGTCAACACCTTGAGTTTGGATCATAACCTGATTGAGTTCGTTCCTGAGGGGATATTTTCAAATCTGCATAAACTAGCTAGACTTGATATGACGTCCAATAAGCTGAAGAAGATTCCTCCGGATCCTTTATTTCTGCGTATTCCTGTATACGCCAAGATGAAGGGATCACCGCTGACCGCACTGGTGCTCAGTTTCGGGGGGAATCCGTTGCATTGTAATTGCGAGTTGGTTTGGTTGAGACGTCTTACTCGTGAGGATGATCTGGAGACCTGTGCATCTCCGAGAGAGCTTGCTGGGAAGTATTTCTGGACGATTCGGGAGGAGGAGTTTGTTTGCGAGCCGCCGATGATCACTCGACACACTTCTAAGATGTTTGTGATGGAGGGTCAGGAGGTCAGCCTGCGCTGTCGGTCCGTCGGCGACCCTGAACCCATCGTGCATTGGATCAGTCCTGATGGGAAGCTAATCGCTAACACTTCACGTACAGTATGCTATGATAACGGCTCTCTGGATATCCTGACCGCCACAGTGAAGGATTCTGGCGTGTTTACATGCATCGCTTCTAATGCAGCCGGTGAGGCTACGGCGCCGGTGGAGTTGGTTGTGAATCCTTCACCGCATTATGATCCCAAACTGGAGCCTGAGCCGGGACCCTCGGATATGCCCACGTCTATAAAGTCCAACAGCAGCGGCAGCGGAGGGCAGAATCGAGCTGATCAGCGGGTCACGGTTTCAGAAATTACGCCCAGCTCTGCTATGATCCGCTGGCCTCCACAAAGCCAGATTCCTGGAGTGCGCATGTACCAGGTCCAGTACAACAGCTCCACTGATGACATCCTCATCTACAGaaTGATTCCTGCTTCCCACAAGCGCTTCTTGCTGAGCGATCTGGCCTCGTCCCGTGACTACGAGCTCTGCGTTCTGGCCGTGTATGACGACGGGATCACGTCTCTAACCGCCACACGAATGGTCGGCTGCATATCATTCACCACAGAGCGTGAATTTCGCCACTGCCGCTCCATCCACGATCAATTCCTCGGCGGCACCATGATCATCGTCATCGGCGGCATCATCGTAGCGTCAGTCCTCGTCTTCATCTTTATCCTGCTGATGAAATATAAACTCCACAGCCAGCATTACAAGCAGAAAGCAGCCCGGGTTAGTAATGTTTGCTCCCAGACCAACGGTGGCCAGCAGGGGGCGACATCCGGTCCTCCGCCACGCTCGTCTTCTGGATCCGCTAATAAACCATCCGTCCCGCTGGGGTCCGAAAGACAAGAAGGATCCCATGGAATGGAGGGAGGATACGGGGCTCTGAGAGGAACCACGGTGGTGGACTTAAACCCAGAATATGGGAAATCCGTCAAAGAGGACGACTCCATATCGCAATAACACAGGGCTCGGTCCCACCTCCCTTCCCATTCTCTTCACTCCACACAActtattctgttttgtttttgtttccggCGTCCTGCGGCCTTACTGGGGGTTTTCTCCTGTCCAAGgcAAACCCACAGTCTGGAAGCTAAATGCAGGATGCCAATGGATCCAATCTATTAGCAGGACACGCAGCGGCGGCGGCGAGGCAAAACCCAACAGCCTTCTTTATGCAAGACTCTCCCAGACCGTGGATATTACAGTATGTGCCTCTCTGGAGCACACAAgcaatgttttctttcttttgcttttttaaatatagaaagAGAATCATCATCAATTCACTTCACGGAGGGAAACGCTTTGGGAATACGCCGCGGATGTTTCAGTCAAATATTATGGGAAATGTTCAATTGCGACGGTCCAGTCCAGTGCCAAAGGATTGAAGCGTGTGGATTTAACATTCTCCCGAAGGCTCCGAAAGACTCGATGGATTAATGCTGACAAAAGTATTGACTTCGGTACCAATCTGTGGTGAAATTTGAAAAACATactaacatttaagcgctgttgaAAACGTTcataaacaccactgattggtcATCGTgctcatgtgctcaacagaaatgactgtgattggctgtaaagATCATCGGTTCACCACATGAATCTCGGGGTGCATCGCTAGGCACTCTGCGCCTATAACGGAAGTTCGAAAGCACAAATATTGATTAACATAACCTAAATCATCAAACAGAACAACAAACAAGAGTCGTTTTTCCAAAAagaatacattatttattattttaacatgaaCGATCATCGCTTGACAGATTCGGAAAAATCTAGCAAACATTTACATCTGTGTAATGGCTGAAATGTTGCTTGTATAtgaaataatctaaatatttagCTATGATAAACCTTAAAACgtgtaatattaatacattaacatatgaaaaagattagttctgctgttgtttataaaCTCCAATTTTGATGATGTACAATGAAGATGTTCTCATGTCACACTCAGTGAACCAATCTCATCAGTGCCTTTTCTAGTGCACAAAATTTGTGCACACGACCTACTGATGAATGAGCTATGGTGCTaattgcatacctgtcaaccctcctgttgtcCTGGGATTcacctgtattttacagttctatcccgc

Function

symbol description
si:cabz01090165.1 Orthologous to human LRFN3 (leucine rich repeat and fibronectin type III domain containing 3).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-161017-71 Orthologous to human LRFN3 (leucine rich repeat and fibronectin type III domain containing 3).

Ensembl:

ensembl_id ENSDARG00000039500

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026019 False 2054 mRNA 0.54 2 49411417 49428855
TCONS_00026020 True 3104 nonsense_mediated_decay 0.49 3 49411417 49447042

Neighbor

gene id symbol gene type direction distance location
XLOC_013102 CABZ01070258.1 coding upstream 51632 49282063 ~ 49359785 (+)
XLOC_013103 NA coding upstream 53932 49356457 ~ 49357485 (+)
XLOC_013101 yif1b coding upstream 143561 49248389 ~ 49267856 (+)
XLOC_013100 si:ch211-136a13.1 coding upstream 163938 49225552 ~ 49247479 (+)
XLOC_013099 BX663503.1 coding upstream 196394 49193824 ~ 49215023 (+)
XLOC_013105 NA coding downstream 458982 49906024 ~ 49913858 (+)
XLOC_013106 mob2b coding downstream 522526 49969568 ~ 50040161 (+)
XLOC_013107 NA coding downstream 557692 50004734 ~ 50005794 (+)
XLOC_013108 NA coding downstream 597274 50044316 ~ 50046147 (+)
XLOC_013109 scamp5b coding downstream 641958 50089000 ~ 50100149 (+)
XLOC_013098 NA non-coding upstream 254465 49124765 ~ 49156952 (+)
XLOC_013090 NA non-coding upstream 854590 48523937 ~ 48556827 (+)
XLOC_013110 NA non-coding downstream 680447 50127489 ~ 50127777 (+)
XLOC_013113 NA non-coding downstream 1042236 50489278 ~ 50490440 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000017_01534818_01538322 NA coding CI01000017 null 1534276 ~ 1538593 (+)