XLOC_013105


Basic Information

Item Value
gene id XLOC_013105
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 49906024 ~ 49913858 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027194
ctcactTTGGTTCTTTCAAACGGCGGCTGTGTAAAATAAGCGTATAGCAGAAATGTCCAGACTCCGGtcttggagggctggtgtcctgcaaagtttatttccaaccccattcagacacagctggcctagctaatcaagctcttcctaggctttctagaaacattcttgcaggtgtgttgaagcaagctggagctaaaatctgcaggacaccggccctccaggaccgagtttggacacccctggcgtGTAGCCTCATGTCTTCGTCTTTTTCTCAAACATTCAAATACTTCTTTACTTCGAATCAAATAATGTTGTGATTCTCCTAAAATCCTTATAGGAAAACGTTCAGAAGAAGCGCTGCTGAAATACTGATGCTCTCCACTGTTGTATTATCTCCACAGTGAAATGCCGCTTGCAGGACGGGATGTAAGCGAGAGGCGTTTTACATCACACTAAAGCGGGAAGCGTTCTGGAGAAAAGGATTTGAGGGCGTTTGCGCTGGAGTTCATCTGCTGGCGGATGGTTTGGAGGACTTTAGAGGAGCTGAAGAACTGATGAGTGaacagaaaatgtgatgaagacgAAGAACATCAGAAGAAAATCTTCAAACGATTCCGAGACTTCAAAAGATGGCAGACGATCCACCACAGAAGAAGAACAGGCTTTACAGAACACACAAGCTTTTCATTTGAGGATCTGCAGTAATAACATCAGGCTGTCGGAAATAGCAGACGTGCCGGAGAGAAGATAAATGAGGACGCAAATTAAGCTGATTTTCTTCTTGTTTTAGGCATAAATCTTATTAGGAACTAAActacaaagaagaagaagaagaaaaaagtgtgtgtgattgtgtgtttgagtgtgtgcatgttcgtgtacgtgtttttgtgacatatcaggacacagatCTGTATAATGGCATAGGCAGGGCCGGTGAGTCCATAGAAGGGACCTAGGC

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0042692 muscle cell differentiation biological_process
GO:0048468 cell development biological_process
GO:0090257 regulation of muscle system process biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0006936 muscle contraction biological_process
GO:0006937 regulation of muscle contraction biological_process
GO:0006941 striated muscle contraction biological_process
GO:0006942 regulation of striated muscle contraction biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0007271 synaptic transmission, cholinergic biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0003008 system process biological_process
GO:0003012 muscle system process biological_process
GO:0003015 heart process biological_process
GO:0061061 muscle structure development biological_process
GO:0060537 muscle tissue development biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0060047 heart contraction biological_process
GO:0042383 sarcolemma cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0016528 sarcoplasm cellular_component
GO:0016529 sarcoplasmic reticulum cellular_component
GO:0005892 acetylcholine-gated channel complex cellular_component
GO:0005901 caveola cellular_component
GO:0044853 plasma membrane raft cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0030054 cell junction cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0005231 excitatory extracellular ligand-gated ion channel activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027194 True 961 lncRNA 0.44 3 49906024 49913858

Neighbor

gene id symbol gene type direction distance location
XLOC_013104 si:cabz01090165.1 coding upstream 458982 49411417 ~ 49447042 (+)
XLOC_013102 CABZ01070258.1 coding upstream 546239 49282063 ~ 49359785 (+)
XLOC_013103 NA coding upstream 548539 49356457 ~ 49357485 (+)
XLOC_013101 yif1b coding upstream 638168 49248389 ~ 49267856 (+)
XLOC_013100 si:ch211-136a13.1 coding upstream 658545 49225552 ~ 49247479 (+)
XLOC_013106 mob2b coding downstream 55710 49969568 ~ 50040161 (+)
XLOC_013107 NA coding downstream 90876 50004734 ~ 50005794 (+)
XLOC_013108 NA coding downstream 130458 50044316 ~ 50046147 (+)
XLOC_013109 scamp5b coding downstream 175142 50089000 ~ 50100149 (+)
XLOC_013110 NA coding downstream 213631 50127489 ~ 50127777 (+)
XLOC_013099 BX663503.1 non-coding upstream 691001 49193824 ~ 49215023 (+)
XLOC_013098 NA non-coding upstream 749072 49124765 ~ 49156952 (+)
XLOC_013090 NA non-coding upstream 1349197 48523937 ~ 48556827 (+)
XLOC_013113 NA non-coding downstream 575420 50489278 ~ 50490440 (+)
XLOC_013115 NA non-coding downstream 622195 50536053 ~ 50539640 (+)

Expression


Co-expression Network