XLOC_013107


Basic Information

Item Value
gene id XLOC_013107
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 50004734 ~ 50005794 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026943
CAGATGCTGCTTATATTTGTTCGCTTATGATGAAAACTAAGGACAATTTTTGAGCTTTTTTCTCATGGAGAGAGTCCAGGACGATCCATCGGGTGATCAGGGAAGTGTAGAAATCCCTCACAGTCTTTTGTGGATGCTTTTTAACAGggctcaacaataaggactgcccgatggcccggggctagtgtgagagacgcttgggacagtagacgggatcattactggcccgatggGGGCcactttttgttaaataatttcgaacagAAATAAAATACTTACTCATC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026943 True 284 lncRNA 0.44 2 50004734 50005794
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_013105 NA coding upstream 90876 49906024 ~ 49913858 (+)
XLOC_013104 si:cabz01090165.1 coding upstream 557692 49411417 ~ 49447042 (+)
XLOC_013102 CABZ01070258.1 coding upstream 644949 49282063 ~ 49359785 (+)
XLOC_013103 NA coding upstream 647249 49356457 ~ 49357485 (+)
XLOC_013101 yif1b coding upstream 736878 49248389 ~ 49267856 (+)
XLOC_013108 NA coding downstream 38522 50044316 ~ 50046147 (+)
XLOC_013109 scamp5b coding downstream 83206 50089000 ~ 50100149 (+)
XLOC_013110 NA coding downstream 121695 50127489 ~ 50127777 (+)
XLOC_013111 insyn1 coding downstream 270139 50275933 ~ 50356788 (+)
XLOC_013112 CU896640.1 coding downstream 456187 50461981 ~ 50463268 (+)
XLOC_013099 BX663503.1 non-coding upstream 789711 49193824 ~ 49215023 (+)
XLOC_013098 NA non-coding upstream 847782 49124765 ~ 49156952 (+)
XLOC_013113 NA non-coding downstream 483484 50489278 ~ 50490440 (+)
XLOC_013115 NA non-coding downstream 530259 50536053 ~ 50539640 (+)
XLOC_013116 NA non-coding downstream 615040 50620834 ~ 50622195 (+)

Expression

Expression of XLOC_013107 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
End of interactive chart.

Expression of XLOC_013107 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
End of interactive chart.

Co-expression Network