XLOC_013109 (scamp5b)


Basic Information

Item Value
gene id XLOC_013109
gene name scamp5b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 50089000 ~ 50100149 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026022
AGTCTGGGAATGCGGGAACTGTTTACTATCGCTCAATGAAGATCGCAGGAATCTTGAAGAAAGAAACAGCGTTAATAATCGAGCATCTCCGCTTGCTTTAGTGTTTATTTAGTGTATTTGAAGGGTGAAGTCATGGCATTGTAGTGCTGGCGGTGTGTGTGCAGAAGATTGAAAGCTCTTAAGAACAGTTTGCTGTCAGGAAGTTTCACGATGGCTGAAAACAACTTTCCACCTCTGCCGGGCTTCATTCCTCTCAAGCCGTGTTTCCACCAGGACTTTGAGGAGATTCCTGACCAGCACCGCACATTGTGCAAGAGATTCTACTACCTGTGGATCTTGTACGGCGTGACCCTGCTGGTGAATTTCTTCGGCTGTATGGCGTGGATGTTTGGTGGCGGTGGAGTCACAAACTTTGGCATGTCGATGATTTGGGTGATTCTCTTCACACCCTGCTCTTATGTGTGCTGGTTCCGGCCCATTTACAATGCCTTCAAgACTGACAGCTCGTTCTACTTCATGGCGTTCTTCTTTGTCTTCATGGCACAACTTTTCATCGCTATCATTCAGGCCATCGGTATTCCAGGATGGGGTGTTTGTGGCTGGTTGGGCACCATCTCCTTCTTCGGCACCAGTATCTTTGCTTCCATCATCATGTTGATCCCTACACTCATGTTCACCGCCGTCTCCGTCATCTCCTTCCTTGCACTAAcgaagGTTCATAACTTCTACCGTGGCAGTGGAGCCAGCATGAGTAAAGCGCAGGAGGAGTGGGTGTCTGGAGCCTGGAAAAACCCTCATGTTCAGCAGGCAGCGCAGCAGGCGGCTCTGAGTGCAGCAACTGGAGCCATGCAGAACCCACAGTCCCCGCAGTACTCCACCCCAACATATGACAACACCATGTAGACCTCCACCAACACAACACCATGTAGACCTCCACCAACACAACACCATGTAGACCTCCACCAACACAACACCATATAGACCTCCACCAACACAACACCATGTAGACCTCCATCAACACAACACCATGTAGACCTCCACCAACACAACACCATGTAGACCTACACCAACACAACACCATGTAGACCTCCACCAACACAACACCATGTAGACCTCCACCAACACAACACCATGTAGACCTCCACCAACACAACACCATGTAGACCTCCACCAACACAACACCATGTAGACCTCCACCAACACAACACCATGTAGACCTCCACCAACACAACACCATGTAGACCTCTACCAACACAACACCATGTAGACCTCCACCAACACAACACCATGTAGACCTCCAGCAGCACAGTACTGCTTGGTTGTTGcaaaaagggatacagctgtggcctGAATTTAATGAGAGTtacagtattaatattatttattaagttacaCATTAATTGTACACTGAgtggtttagtggttagcactgtgggctcacagcaagaacgtcgctggttctagtcccagctgggccacttgtcatttctgtgtttggactgtgggggaaacctgagcacctggaggaaacccacgccaacatggggagaacatgcaaacttcacacagaaacgccaactgacccagctgagattcgaaccagagacctttttgctgtgaggccacagtgctaaccactgagcccccgtgCTTCctcatattattataataatataaataattctcattaccTCTCGGCTGCAGCTGTATCTCTTTTAGACTTTACCGGTCTGCTGAAATCCAGAATCTTTGAAAAGTGGAAATGTCAGGGAGTTTTAAATATTAATCATGGGAATTATGAGTTATAGCTGCTGTATATGTTCTAAATTTGGCATTTAAACTGACTAAAGTCAATATGAAtcttatgaaaataataattcagttattgtttttttaaatgtaataattttcctgcggcttagtcccttattcatcaggggtcgccacagcggaatgaaccgccaactattccagcatatgttttacacagcggctgtCCTTCCAGAAAAAATAATTTCTGCTCCATAAATGACTTTTAAACATCTGTGTTAATTTATCATGATCTATTAGACAAATGATTGTATTATTTAACTAATTAGacatgttttgttttcatttctttaccatgtataatgtgtgtgttgAAAATGTTTAGTTTAAGGGCCTCTGCTGTTTTGTCAGGTCCCGTGTGGTGTAAATAGTATAAATGCATTACTGTCAATTACCTGCAGTAACAAAAGGGATTTGTGAATTCTTTACTATTTTTAAGGAGAAATTAGACATTTTCCTTGTGATATAATACTAGTGTTAATAAAGTATCAACATCtt
>TCONS_00026023
ATTGAAAGCTCTTAAGAACAGTTTGCTGTCAGGAAGTTTCACGATGGCTGAAAACAACTTTCCACCTCTGCCGGGCTTCATTCCTCTCAAGCCGTGTTTCCACCAGGACTTTGAGGAGATTCCTGACCAGCACCGCACATTGTGCAAGAGATTCTACTACCTGTGGATCTGTGAGtctaaaacacagacacacacacacacatgaaatcAGCCCACAAattccctttcagctgcaacccatcactgggaaacacccatacactctcaatcacaTTCATAAtctatacggacaatttagctttcccaattcccctagagcgcatgtgtttggactgtgggggaaaccggagcccatgccaacacagggagaatatgcaaactccacacagaaatgtcaagtgAACCAGCCGGGAcgtgaaccagcgaccttcttggtgtgaggcgacagctctacccacttatgaataaacaaataaatgtaaatgtaaagactCTGCTGGCATCAGTTATGCAGTGTTTTGCA

Function

symbol description
scamp5b Predicted to act upstream of or within protein transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SCAMP5 (secretory carrier membrane protein 5).

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-120215-76 Predicted to act upstream of or within protein transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SCAMP5 (secretory carrier membrane protein 5).

Ensembl:

ensembl_id ENSDARG00000040274

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026022 False 2328 mRNA 0.44 7 50089000 50100149
TCONS_00026023 True 523 lncRNA 0.46 2 50090641 50091268

Neighbor

gene id symbol gene type direction distance location
XLOC_013108 NA coding upstream 42853 50044316 ~ 50046147 (+)
XLOC_013106 mob2b coding upstream 48839 49969568 ~ 50040161 (+)
XLOC_013107 NA coding upstream 83206 50004734 ~ 50005794 (+)
XLOC_013105 NA coding upstream 175142 49906024 ~ 49913858 (+)
XLOC_013104 si:cabz01090165.1 coding upstream 641958 49411417 ~ 49447042 (+)
XLOC_013110 NA coding downstream 27340 50127489 ~ 50127777 (+)
XLOC_013111 insyn1 coding downstream 175784 50275933 ~ 50356788 (+)
XLOC_013112 CU896640.1 coding downstream 361832 50461981 ~ 50463268 (+)
XLOC_013113 NA coding downstream 389129 50489278 ~ 50490440 (+)
XLOC_013114 ubl7b coding downstream 423721 50523870 ~ 50533716 (+)
XLOC_013102 CABZ01070258.1 non-coding upstream 729215 49282063 ~ 49359785 (+)
XLOC_013103 NA non-coding upstream 731515 49356457 ~ 49357485 (+)
XLOC_013115 NA non-coding downstream 435904 50536053 ~ 50539640 (+)
XLOC_013116 NA non-coding downstream 520685 50620834 ~ 50622195 (+)
XLOC_013122 CABZ01102517.1 non-coding downstream 682098 50782247 ~ 50786520 (+)

Expression


Co-expression Network