XLOC_013113


Basic Information

Item Value
gene id XLOC_013113
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 50489278 ~ 50490440 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027197
AGGAGGCCACGAAAAACCATACGGCAAGATGATGATGCTACGTCACATTGTGGAAAACTGGATGGATTTAGACATCTTACATGTAAGTAATTAAATCCAGAAAGACGGTTCCTTGAGTTAAGTTACAGTAAAATAGCAATAGTTGAGCTACTGTACAGTGAACTGTAGAATTACTGAAAGTGTAAagatttgcagtatatttattttattttgctgtataTTATCATGTAGGAACTTCTGTAAGCACATGACGTTTCAAATGTTAATTTACATAAAGACGATTATTCAATGTCTGACAGAAAAATATAAGAGGTATTGCAGATTAGCAAATTATAACATTAAACAGACGTCTGagtgatttgtttgtgttgatgtAGAATGCACTTTTGTCAATACAGCTTAGGTTAgatacatgtaatattaatacagtaATGTTTTCTTCTGTTCAGTTGGTGATACATTTATGAAAGTATAATTTGAGCACACAAATCACAGAGGTAACGTGACTTGTCTGGTTGTTATAGAGAAGGAAGCACACATGTTTGTGTGTTAGCTGATGCAGAGTGACTGAACAAATGCTACCATCAtatttgtttaacaaaatattgttgtttcAAACCGCTATTACAACAATTTctttaatgttgatttatatgCCATTTCTGGGCTGGAGCAGGACTTGCAAGGCAAGAAAACAGAGAAAACCTGAATTCAAAACATGAAGTAAGATCATGTTATTACTTCCAATTCAGAACTCAAATGAAACTCAAAAAGTGTGCTGTTAAATGACTTCTTTATTAAGAGCTTTGCATAATCTGAAATGTCCTCAGACTGGTGTGTGCAGTGATGACGATGAAGAACAGCAGTGTGCTGATGAAGGAAATGTTGAAGATGCTGTAGTGCCATGGACAAGACCCTGCATCCCTCCACCTGCCTGCGTGTCCTCATCTGAGCCAGATGCTGGTGTGGTCTCTTCATCTTCAGTATGAATCGGTTTCTCAGGCATGGACAGCCTCACCTCACAACTCTGTTCCAGTCTGACTGCAGCACTGAGGGATGTGATGGCAAAAACAAGTGAAGTCCAGCATGCAGCAGAACATGGGGTTTTGTCTGAAATACATGATTGTTTGAATAAGTTTGAATAAAGCTTAGTTTCGTATCTT

Function

GO:

id name namespace
GO:0046034 ATP metabolic process biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0042773 ATP synthesis coupled electron transport biological_process
GO:0042775 mitochondrial ATP synthesis coupled electron transport biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0006120 mitochondrial electron transport, NADH to ubiquinone biological_process
GO:0022900 electron transport chain biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0007059 chromosome segregation biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0015980 energy derivation by oxidation of organic compounds biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006281 DNA repair biological_process
GO:0045333 cellular respiration biological_process
GO:0098803 respiratory chain complex cellular_component
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0005747 mitochondrial respiratory chain complex I cellular_component
GO:0030964 NADH dehydrogenase complex cellular_component
GO:0072686 mitotic spindle cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0005819 spindle cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0015630 microtubule cytoskeleton cellular_component
GO:0032991 protein-containing complex cellular_component
GO:1990204 oxidoreductase complex cellular_component
GO:0045271 respiratory chain complex I cellular_component
GO:0043226 organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0070469 respirasome cellular_component
GO:0098796 membrane protein complex cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0015631 tubulin binding molecular_function
GO:0008017 microtubule binding molecular_function

KEGG:

id description
ko03050 Proteasome
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027197 True 1163 lncRNA 0.37 1 50489278 50490440

Neighbor

gene id symbol gene type direction distance location
XLOC_013112 CU896640.1 coding upstream 26010 50461981 ~ 50463268 (+)
XLOC_013111 insyn1 coding upstream 132490 50275933 ~ 50356788 (+)
XLOC_013110 NA coding upstream 361501 50127489 ~ 50127777 (+)
XLOC_013109 scamp5b coding upstream 389129 50089000 ~ 50100149 (+)
XLOC_013108 NA coding upstream 443131 50044316 ~ 50046147 (+)
XLOC_013114 ubl7b coding downstream 33430 50523870 ~ 50533716 (+)
XLOC_013115 NA coding downstream 45613 50536053 ~ 50539640 (+)
XLOC_013116 NA coding downstream 130394 50620834 ~ 50622195 (+)
XLOC_013117 chrnb4 coding downstream 136645 50627085 ~ 50635419 (+)
XLOC_013118 chrna3 coding downstream 147566 50638006 ~ 50648476 (+)
XLOC_013107 NA non-coding upstream 483484 50004734 ~ 50005794 (+)
XLOC_013105 NA non-coding upstream 575420 49906024 ~ 49913858 (+)
XLOC_013103 NA non-coding upstream 1131793 49356457 ~ 49357485 (+)
XLOC_013122 CABZ01102517.1 non-coding downstream 291807 50782247 ~ 50786520 (+)
XLOC_013123 CABZ01102518.1 non-coding downstream 296193 50786633 ~ 50790250 (+)
XLOC_013102 CABZ01070258.1 non-coding upstream 1129493 49282063 ~ 49359785 (+)

Expression


Co-expression Network