XLOC_013114 (ubl7b)


Basic Information

Item Value
gene id XLOC_013114
gene name ubl7b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 50523870 ~ 50533716 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026029
ACCGGGGAAAAGGCACTCTCTGCGGGCTCCGGCATTCCCGATCAGGCCCTCAGCTCCGGTGAACTCTCTGGAAGCTCATGTTTATCCGCagaaatgatgatgatgagggaAACAGCGGCTGCTCGAGTCCAGCTGGTTCAATTTTTTCCTCCGGTCGGACTCGGAAAGTGAATAATAAACCACTCCTATACCATTCCTGCGCTCGGTCCAGCCTGGTGACGTCAGCACTTCTGGAGCAGCTCAGCCAATCACGGCCGCTCtctatattttaacaataacgAATATGGCGAGTTCAGCTTGGCATCTCTCTCTGAAAGTCAGCGACAAACCCAAAGCACTGTTCCAGTTTCCAGATCCTGAACCTGGAGATGTTCATCCAGGAGGATATCAGGTGTCCACGCTCAAGCAGCTGATCTCAGTGCAGTTATCAGACTCTCTGCCCGACCCCGATCTCATCGattttgtgcacTGCGGCTGTGTGCTGAAGGATGATCTCACACTAGATTCGTACGGCATCAAGTCTGGATCAACTCTGCATATCATCAAGAAGACGTGGCCGGAGCCGGAGATCCAGCCTGAGCCCGTCAACAGATCTGCAGCCGCCAGAGAGTTCAGGATGCTTCAGGCCGCGATGCTCTCCAATGCAACATACAGAGAAGCGGTGTTTAAGATGCTGGCCAATAAAGAGTCGCTGGACCAGATCATCGTGGCATCTCCAGGCCTCAGCTCAGACCCGGTCGCATTAGCTGTGCTTCAGGATAAGGATCTGTTCGTTCAGTTCACAGACCCAAACCTGCTGGACAC
>TCONS_00026031
ACATCCTTCCATCAGCTGTTGACAAAACGCTGCCTCACCGACTGCTGGATGAACAAATCGGGATAAACCGAATATGGCGAGTTCAGCTTGGCATCTCTCTCTGAAAGTCAGCGACAAACCCAAAGCACTGTTCCAGTTTCCAGATCCTGAACCTGGAGATGTTCATCCAGGAGGATATCAGGTGTCCACGCTCAAGCAGCTGATCTCAGTGCAGTTATCAGACTCTCTGCCCGACCCCGATCTCATCGattttgtgcacTGCGGCTGTGTGCTGAAGGATGATCTCACACTAGATTCGTACGGCATCAAGTCTGGATCAACTCTGCATATCATCAAGAAGACGTGGCCGGAGCCGGAGATCCAGCCTGGtgtgtttagagctcatttctgatGAGACATTCCTGAATTATATTCTGTCTGTGATGTGTTTCTGCATCTTTTAGAGCCCGTCAACAGATCTGCAGCCGCCAGAGAGTTCAGGATGCTTCAGGCCGCGATGCTCTCCAATGCAACATACAGAGAAGCGGTGTTTAAGATGCTGGCCAATAAAGAGTCGCTGGACCAGATCATCGTGGCATCTCCAGGCCTCAGCTCAGACCCGGTCGCATTAGCTGTGCTTCAGGATAAGGATCTGTTCGTTCAGTTCACAGACCCAAACCTGCTGGACACGTTGATCAGGTCTCACCCGTCGCTGGTTAATGCCATTATATTAATCCTGCACTCAGTGACCAGCAGCTCCGGTCAGTCCAGCAGCGGCTCCTCACGCAGCACAGCGGCCAGTTCATACAGCCAGATGCCCGGAGGATTTCTGTTTGATGGCATGTCAGACGATGAAGACGATTTTCAGTCG
>TCONS_00026030
ACATCCTTCCATCAGCTGTTGACAAAACGCTGCCTCACCGACTGCTGGATGAACAAATCGGGATAAACCGAATATGGCGAGTTCAGCTTGGCATCTCTCTCTGAAAGTCAGCGACAAACCCAAAGCACTGTTCCAGTTTCCAGATCCTGAACCTGGAGATGTTCATCCAGGAGGATATCAGGTGTCCACGCTCAAGCAGCTGATCTCAGTGCAGTTATCAGACTCTCTGCCCGACCCCGATCTCATCGattttgtgcacTGCGGCTGTGTGCTGAAGGATGATCTCACACTAGATTCGTACGGCATCAAGTCTGGATCAACTCTGCATATCATCAAGAAGACGTGGCCGGAGCCGGAGATCCAGCCTGAGCCCGTCAACAGATCTGCAGCCGCCAGAGAGTTCAGGATGCTTCAGGCCGCGATGCTCTCCAATGCAACATACAGAGAAGCGGTGTTTAAGATGCTGGCCAATAAAGAGTCGCTGGACCAGATCATCGTGGCATCTCCAGGCCTCAGCTCAGACCCGGTCGCATTAGCTGTGCTTCAGGATAAGGATCTGTTCGTTCAGTTCACAGACCCAAACCTGCTGGACACGTTGATCAGGTCTCACCCGTCGCTGGTTAATGCCATTATATTAATCCTGCACTCAGTGACCAGCAGCTCCGGTCAGTCCAGCAGCGGCTCCTCACGCAGCACAGCGGCCAGTTCATACAGCCAGATGCCCGGAGGATTTCTGTTTGATGGCATGTCAGACGATGAAGACGATTTTCAGTCGGCCAGCCGTGGCGGCTCCTCGTGGCCCCTAAGAGCGTCTGGGTCCAGACCGGGGACTCTTGCTCACAGCGGAGCCATGGGGCCTCGACCAATCACACAAAGTGAACTCACACACGCTCTCGCTTTAGCCAGCACACCTGAAGCCGGCGGCACTGCTCCAGCACagGATGGGTCTGCGGCTGGAGCTCCGGTCAGCAGTGGTCTCTTCAGCCACGCACTGCAGCAGGCACTACAGGCCTCTGGCGTGAGCTCACTTCAgcagggCCGCTGGCAGCCGCAGATGCAGCAGTTGAGGGATATGGGCATCCAGGATGAAGAAGTGGCTCTGCGCGCTCTGACCGCCACTAATGGAGATCTGCAGGCCGCGCTGGAGCTCATCTTTGCAGGAGGACTCTAGTCTGACACACTTTAATTTGactctttttttacttttgtccTAAATAAAGCTTCATTTCAGAACTTG
>TCONS_00026032
CTGTTGACAAAACGCTGCCTCACCGACTGCTGGATGAACAAATCGGGATAAACCGAATATGGCGAGTTCAGCTTGGCATCTCTCTCTGAAAGTCAGCGACAAACCCAAAGCACTGTTCCAGTTTCCAGATCCTGAACCTGGAGATGTTCATCCAGGAGGATATCAGGTGTCCACGCTCAAGCAGCTGATCTCAGTGCAGTTATCAGACTCTCTGCCCGACCCCGATCTCATCGattttgtgcacTGCGGCTGTGTGCTGAAGGATGATCTCACACTAGATTCGTACGGCATCAAGTCTGGATCAACTCTGCATATCATCAAGAAGACGTGGCCGGAGCCGGAGATCCAGCCTGAGCCCGTCAACAGATCTGCAGCCGCCAGAGAGTTCAGGATGCTTCAGGCCGCGATGCTCTCCAATGCAACATACAGAGAAGCGGTGTTTAAGATGCTGGCCAATAAAGAGTCGCTGGACCAGATCATCGTGGCATCTCCAGGCCTCAGCTCAGACCCGGTCGCATTAGCTGTGCTTCAGGATAAGGATCTGTTCGTTCAGTTCACAGACCCAAACCTGCTGGACACGTTGATCAGGTCTCACCCGTCGCTGGTTAATGCCATTATATTAATCCTGCACTCAGTGACCAGCAGCTCCGGTCAGTCCAGCAGCGGCTCCTCACGCAGCACAGCGGCCAGTTCATACAGCCAGATGCCCGGTAAACACTGACAAACATGCAGAAAACACAGAGTATGATCATAATTACAGTGTCTGAACATTCGTGTGTGTTGACAGGAGGATTTCTGTTTGATGGCATGTCAGACGATGAAGACGATTTTCAGTCGGCCAGCCGTGGCGGCTCCTCGTGGCCCCTAAGAGCGTCTGGGTCCAGACCGGGGACTCTTGCTCACAGCGGAGCCATGGGGCCTCGACCAATCACACAAAGTGAACTCACACACGCTCTCGCTTTAGCCAGCACACCTGAAGCCGGCGGCACTGCTCCAGCACagGATGGGTCTGCGGCTGGAGCTCCGGTCAGCAGTGGTCTCTTCAGCCACGCACTGCAGCAGGCACTACAGGCCTCTGGCGTGAGCTCACTTCAgcagggCCGCTGGCAGCCGCAGATGCAGCAGTTGAGGGATATGGGCATCCAGGATGAAGAAGTGGCTCTGCGCGCTCTGACCGCCACTAATGGAGATCTGCAGGCCGCGCTGGAGCTCATCTTTGCAGGAGGACTCTAGTCTGACACACTTTAATTTGactctttttttacttttgtccTAAATAAAGCTTCATT
>TCONS_00026033
ACAAAACGCTGCCTCACCGACTGCTGGATGAACAAATCGGGATAAACCGAATATGGCGAGTTCAGCTTGGCATCTCTCTCTGAAAGTCAGCGACAAACCCAAAGCACTGTTCCAGTTTCCAGATCCTGAACCTGGAGATGTTCATCCAGGAGGATATCAGGTGTCCACGCTCAAGCAGCTGATCTCAGTGCAGTTATCAGACTCTCTGCCCGACCCCGATCTCATCGattttgtgcacTGCGGCTGTGTGCTGAAGGATGATCTCACACTAGATTCGTACGGCATCAAGTCTGGATCAACTCTGCATATCATCAAGAAGACGTGGCCGGAGCCGGAGATCCAGCCTGGtgtgtttagagctcatttctgatGAGACATTCCTGAATTATATTCTGTCTGTGATGTGTTTCTGCATCTTTTAGAGCCCGTCAACAGATCTGCAGCCGCCAGAGAGTTCAGGATGCTTCAGGCCGCGATGCTCTCCAATGCAACATACAGAGAAGCGGTACCAAAGACTCTAGATAAAATACAAGACACGTCACTCCTGTAGTTTTCAGTGGGCAAAtgtggttgttgctagaagggatacagctgtggccagAGGTTAACAAGAATTAATTATGcaatttataaaattatacattatatgtattttataaacatcTCCCCCTACCCAAACCCTCACAGTcatgtaaatacagtaattacgCAGAGTaatgttcatattatttattaaatgaacaattaaatcatattttatgaTCATTTACCGCtatcccaaccctcacagtaatgtaaaaatattagttaTTGTTGTAGAGCGGTGCTCTCAAACCGGGTTCCTGCCtcagttctgcacagttttgctccaaccctaatcaaacacagccaa
>TCONS_00026034
AATATGGCGAGTTCAGCTTGGCATCTCTCTCTGAAAGTCAGCGACAAACCCAAAGCACTGTTCCAGTTTCCAGATCCTGAACCTGGAGATGTTCATCCAGGAGGATATCAGGTGTCCACGCTCAAGCAGCTGATCTCAGTGCAGTTATCAGACTCTCTGCCCGACCCCGATCTCATCGattttgtgcacTGCGGCTGTGTGCTGAAGGATGATCTCACACTAGATTCGTACGGCATCAAGTCTGGATCAACTCTGCATATCATCAAGAAGACGTGGCCGGAGCCGGAGATCCAGCCTGAGCCCGTCAACAGATCTGCAGCCGCCAGAGAGTTCAGGATGCTTCAGGCCGCGATGCTCTCCAATGCAACATACAGAGAAGCGGTGTTTAAGATGCTGGCCAATAAAGAGTCGCTGGACCAGATCATCGTGGCATCTCCAGGCCTCAGCTCAGACCCGGTCGCATTAGCTGTGCTTCAGGATAAGGATCTGTTCGTTCAGTTCACAGACCCAAACCTGCTGGACACGTTGATCAGGTCTCACCCGTCGCTGGTTAATGCCATTATATTAATCCTGCACTCAGTGACCAGCAGCTCCGGTCAGTCCAGCAGCGGCTCCTCACGCAGCACAGCGGCCAGTTCATACAGCCAGATGCCCGGAGGATTTCTGTTTGATGGCATGTCAGACGATGAAGACGATTTTCAGTCGGCCAGCCGTGGCGGCTCCTCGTGGCCCCTAAGAGCGTCTGGGTCCAGACCGGGGACTCTTGCTCACAGCGGAGCCATGGGGCCTCGACCAATCACACAAAGTGAACTCACACACGCTCTCGCTTTAGCCAGCACACCTGAAGCCGGCGGCACTGCTCCAGCACagGATGGGTCTGCGGCTGGAGCTCCGGTCAGCAGTGGTCTCTTCAGCCACGCACTGCAGCAGGCACTACAGGCCTCTGGCGTGAGCTCACTTCAgcagggCCGCTGGCAGCCGCAGATGCAGCAGTTGAGGGATATGGGCATCCAGGATGAAGAAGTGGCTCTGCGCGCTCTGACCGCCACTAATGGAGATCTGCAGGCCGCGCTGGAGCTCATCTTTGCAGGAGGACTCTAGTCTGACACACTTTAATTTGactctttttttacttttgtccTAAATAAAGCTTCATTTCAGAACTTGGGTTCAGTGATTTGTCCAGAATTACCTGTAGAAGTCTTGCCAACACGATGGAAGCTGCTTAAGTGTGTATGGTTTTGCTGCTGAAATGGCACAGGGATCAAATCTAGAAAGTGTACTGGGTTTAAATTGGGAGATTTCTTTATCCTTTAAGGTCTTTGTAGgaataatttagtttgttattgGGATAAAACAGATTTATCAATAAATGGAGGTGAAATATTGTCAGTGATAAATACAGCTTGATCACAACATCTACAAGTAAATCCATGAAGTAGATGCGGTTAAATCAGGCCACTGTGGTGATGTGAGGTAAtgagcagcagggggcgctgtgaGACAGTTTATTAACactgagtcagtgcagagattcACTCATCAAGATCAATAATGCTCATTATTATAAGTGcaaaattgattttaactaaCCCTGATCATGaataataactaatataatagtaaataattgtgtctgtaaattaacaaacatcaaaggtagtttaatttattattcctAATATGATTGATATTATAATGACTagtattgttttcattttgattattaattattttattgtgtcATAAACATCTATCAGCTGCCTATAGCTAGCTATTCATTTGAATATGTTTAACCTATTAGTACTAATATAATTACTACTATTatccttataatcattaatattagtattattacacATTATTAGCATCATTATTATTAGATGCCTTTTACtctcaattaatattttttttaaactttttatcatttgttcattttccttccgcttactccctttattaatcaggggtcgccaccgtggaatgaaccgccgacgtATCCAGCGTATgttgtacacagcggatgcccttttagctgcaacccagtactaggaaacacccatacacttttcgctcatacactacggccagtttagtacatagcccatgtgtttggactgaaacctacgccaacacggggagaacatgcaaactccacacagaaataccatctgacccagctgggactcgaaccagtgacctgtgccactgtgatgcccatcactaattttttttactaataatcattttattttatgctaaacATCTTAATTATTATAATCAGCAGCATGTAGATACCTAttacttttataatattttgttaaacCACT
>TCONS_00026035
TAGCTGTACCTGTGTGTATGACTGTACCTGGATATAATGTGCAatgttgtgatgttgtttgatccAGGCCAGCCGTGGCGGCTCCTCGTGGCCCCTAAGAGCGTCTGGGTCCAGACCGGGGACTCTTGCTCACAGCGGAGCCATGGGGCCTCGACCAATCACACAAAGTGAACTCACACACGCTCTCGCTTTAGCCAGCACACCTGAAGCCGGCGGCACTGCTCCAGCACagGATGGGTCTGCGGCTGGAGCTCCGGTCAGCAGTGGTCTCTTCAGCCACGCACTGCAGCAGGCACTACAGGCCTCTGGCGTGAGCTCACTTCAggtgactacacacacacacacacacaccatcactaATGCAGCAAACACAACTCTTATTCACCACTTTGAAATCTGTTATACAGCAGGGGGCACTGTTATGCGTCTTAAAGCCACAGTTCACCCAAAGACAAATGATTCAGGTGAACCGTGCCTTTAAGAAATGCATGtatgtgtccgtgtgtgtgtgtgcagcagggCCGCTGGCAGCCGCAGATGCAGCAGTTGAGGGATATGGGCATCCAGGATGAAGAAGTGGCTCTGCGCGCTCTGACCGCCACTAATGGAGATCTGCAGGCCGCGCTGGAGCTCATCTTTGCAGGAGGACTCTAGTCTGACACACTTTAATTTGactctttttttacttttgtccTAAATAAAGCTTCATTTCAGAACTTG

Function

symbol description
ubl7b Predicted to enable polyubiquitin modification-dependent protein binding activity. Predicted to be involved in ubiquitin-dependent protein catabolic process. Predicted to be active in cytosol. Orthologous to human UBL7 (ubiquitin like 7).

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0005829 cytosol cellular_component
GO:0031593 polyubiquitin modification-dependent protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1334 Predicted to enable polyubiquitin modification-dependent protein binding activity. Predicted to be involved in ubiquitin-dependent protein catabolic process. Predicted to be active in cytosol. Orthologous to human UBL7 (ubiquitin like 7).

Ensembl:

ensembl_id ENSDARG00000040286

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026029 False 804 mRNA 0.53 6 50523870 50529757
TCONS_00026031 False 850 lncRNA 0.51 7 50525112 50530318
TCONS_00026030 False 1237 lncRNA 0.55 11 50525112 50532553
TCONS_00026032 False 1289 lncRNA 0.54 10 50525127 50532543
TCONS_00026033 False 892 lncRNA 0.44 3 50525133 50528912
TCONS_00026034 False 2330 mRNA 0.45 10 50526290 50533716
TCONS_00026035 True 720 lncRNA 0.53 2 50531382 50532553

Neighbor

gene id symbol gene type direction distance location
XLOC_013113 NA coding upstream 33430 50489278 ~ 50490440 (+)
XLOC_013112 CU896640.1 coding upstream 60602 50461981 ~ 50463268 (+)
XLOC_013111 insyn1 coding upstream 167082 50275933 ~ 50356788 (+)
XLOC_013110 NA coding upstream 396093 50127489 ~ 50127777 (+)
XLOC_013109 scamp5b coding upstream 423721 50089000 ~ 50100149 (+)
XLOC_013115 NA coding downstream 2337 50536053 ~ 50539640 (+)
XLOC_013116 NA coding downstream 87118 50620834 ~ 50622195 (+)
XLOC_013117 chrnb4 coding downstream 93369 50627085 ~ 50635419 (+)
XLOC_013118 chrna3 coding downstream 104290 50638006 ~ 50648476 (+)
XLOC_013119 si:dkey-151j17.4 coding downstream 116796 50650512 ~ 50672516 (+)
XLOC_013108 NA non-coding upstream 477723 50044316 ~ 50046147 (+)
XLOC_013107 NA non-coding upstream 518076 50004734 ~ 50005794 (+)
XLOC_013105 NA non-coding upstream 610012 49906024 ~ 49913858 (+)
XLOC_013122 CABZ01102517.1 non-coding downstream 248531 50782247 ~ 50786520 (+)
XLOC_013123 CABZ01102518.1 non-coding downstream 252917 50786633 ~ 50790250 (+)

Expression


Co-expression Network