XLOC_013116


Basic Information

Item Value
gene id XLOC_013116
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 50620834 ~ 50622195 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027199
CAGAGAGTCACAGGTCGTCTGATGAGAACAGATGCTCTGCTTTCTGACCGCAGAGAAGAGATTGTGGACACACACTCCGCTTCATTAGTGTCCAGATCAGTACTGAGaggctgtgtgtgaatgtgtgtgtgtgtgtgtgtgtttgtgtattccaTACATTATATGGACTAAATGTCCCCACACGTATAGCAATACTAGGTCATTTTGATCAtgtgtgttcatttgtttggtCTCCACAAGGAAAAGATGCTGATAGAGGAGTGAGAATGCAGGAGTGTGACGATGTACACGTGCAGAGTGTGCTGTGAGGGTTGAGGAGGACCATATCATCAGTGCTTTTACAGTATAAACTACACCACAAACATGGAGAGTCCTCGCAAAACATTTATACAATGCAGGAGACTCAGAGGACGAGCCTTTGCTGAGACTCAGCTGGTGTTCAGGAGTCTGAGAGTGTGTGAAGAATACAATCACAACACCTGAAGAGCAGAGGAGACGCACACTGCAGGAGAAActtacagtgcacacacacacacacacacacacacacacacacacacgcactgcataaaacacttttattaGTTTGAGTTtctgtcctgtttctagtccaccTATCTCTAAACTCTTCACTCAGTGAGCATCTAGACCAGCACAGCAGACAGTGTTGTGTTCAGCAGTCATGAGTCAGACTGAGGAGAGATTCACCTTAAACAGCAGAATAACCTGACACTGGCGGAAGAGGAATCCTCCTGTTCTCTTTTTGACATGAGGTTATTTGATAAGATTATATAAAGGAGACTTTTGCACACATCAGACACAGCGCTCAGCTATAGACACATGTGAGCCTGGCCGTCATCCAGGAGATAAAAAAGCAAACAGGTAAATCACCTAAAGATTGCCGAGACAAAAGCATCTGAGCTAAAACACTTGACCTGACGACACCTGAGCACCGCCAGCGGCTAATTACAGACAGCAGATCACGATCAGAATCATCAGCTCACATTCACATCAGCTCCATTCATTATTATGCTCTGAGGACTGCCAAAACCCTCCAGAAACCTGCGCCTCAGTATCACTCACAGAGAGGATTAGACACACATGATCCACAGACAAACCTCAGTGCTACAGTCAGAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027199 True 1137 lncRNA 0.45 2 50620834 50622195

Neighbor

gene id symbol gene type direction distance location
XLOC_013115 NA coding upstream 81194 50536053 ~ 50539640 (+)
XLOC_013114 ubl7b coding upstream 87118 50523870 ~ 50533716 (+)
XLOC_013113 NA coding upstream 130394 50489278 ~ 50490440 (+)
XLOC_013112 CU896640.1 coding upstream 157566 50461981 ~ 50463268 (+)
XLOC_013111 insyn1 coding upstream 264046 50275933 ~ 50356788 (+)
XLOC_013117 chrnb4 coding downstream 4890 50627085 ~ 50635419 (+)
XLOC_013118 chrna3 coding downstream 15811 50638006 ~ 50648476 (+)
XLOC_013119 si:dkey-151j17.4 coding downstream 28317 50650512 ~ 50672516 (+)
XLOC_013120 p2ry1 coding downstream 61864 50684059 ~ 50692105 (+)
XLOC_013121 rap2b coding downstream 84984 50707179 ~ 50709715 (+)
XLOC_013110 NA non-coding upstream 493057 50127489 ~ 50127777 (+)
XLOC_013108 NA non-coding upstream 574687 50044316 ~ 50046147 (+)
XLOC_013107 NA non-coding upstream 615040 50004734 ~ 50005794 (+)
XLOC_013122 CABZ01102517.1 non-coding downstream 160052 50782247 ~ 50786520 (+)
XLOC_013123 CABZ01102518.1 non-coding downstream 164438 50786633 ~ 50790250 (+)

Expression


Co-expression Network