CI01000321_00549095_00550611


Basic Information

Item Value
gene id CI01000321_00549095_00550611
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 549095 ~ 550648 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000321_00549095_00550611.mRNA
ATGCACAGTGCACCGCAATGGTCGGAGGATGCTATAGCATGCCTCCAAGGCTGCTTTGTGTGTACAGATTGGGAAGTCTTTGAGGGAGAGCTTGATGAGCAGACTGAAGTTATTACTGATTACATTAAATTCTGTATGGATACTTTGATACCAATCAGAAAGACGATCAGAACATATCCAAATTCAAAACCGTGGATCAACCCACAGATGAAATGTCTCTTTCATAAGAAAAAACTTGCCTTTAGGCAGAAGGACTTTGTGGGCCTCAAAATTATAAACCGGGACATTAATGAAATTTTAAAGGCCAAAAAGAACTATACAAATAAACTGGAGCAGGATTTCGCAAATATGAACACCAAACAGGCCTTTCATCGTGTCAGGACTCTCAGTGGACAATCTATCAAACAAACTATTTGTGTATCCGATCCTACTACTTTTGCTGCTAATCTTAATCATTTTGATACCTCTGATTTTTCAGCAGAGTGTAACAGCATTTTGGATTCTTTGCCTTCTCAAGAGTTGGGTTATGAATCCCTCTTAACCAAGCAGGATGTCTATTTCCAGCTCATTAAGTGCAAACTGAATAAGGCTCCTTGCCCGGATGGAATTCCAGGATGCGTACTTAATCCATTTCTCTATATCCTTTATACAAATGATTGTCAGAGTCCACTTACTCATTATTTTAAATATGCTGATGACACAGCCATCCTTGCACTGCTTAATATCAAGGACAATGATTCTTTTGTGGACTATCAACATTCTATAGCATACTTTACTACATGGTGTGATGATAACTTTCCTCACCTTAATATTTCAAAGACTAAAGAATTGTTTTTTAGCTCTTCCAAAACACAGATCCATCCTTCCAGTATTATCATCAATGGAAAGATGGTTGAAAGGGTGGAGCATTCAGTGGACAGATTTTTGGATATCAAAAAGTGTTTGCTTGTCATAGACAAAAGCAGCTGAAGCATATTGAAATACCAGAGATAAAAACAGAATAGTA

Function

NR:

description
reverse transcriptase, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000321_00549095_00550611.mRNA True 1006 mRNA 0.38 2 549095 550648

Neighbor

gene id symbol gene type direction distance location
CI01000321_00511077_00516356 NA coding upstream 32739 510554 ~ 516356 (+)
CI01000321_00441382_00448773 RPS18.L, GM10260, RPS18, RPS18-PS3, GM6630, BRAFLDRAFT_114927, GM11361, RPS18P5 coding upstream 100315 441382 ~ 448780 (+)
CI01000321_00326486_00355049 NA coding upstream 193893 326393 ~ 355202 (+)
CI01000321_00283589_00284224 NA coding upstream 264758 283324 ~ 284337 (+)
CI01000321_00150756_00152124 NA coding upstream 396906 150756 ~ 152189 (+)
CI01000321_00559268_00567811 NA coding downstream 8620 559268 ~ 568138 (+)
CI01000321_00649226_00658653 NA coding downstream 98578 649226 ~ 658950 (+)
CI01000321_00697882_00700283 CCK coding downstream 146418 697066 ~ 700313 (+)
CI01000321_00785868_00790038 CTNNB1, CTNNB2 coding downstream 235220 785868 ~ 791009 (+)
CI01000321_00815160_00819665 NA coding downstream 264512 815160 ~ 819749 (+)
G456806 NA non-coding upstream 3984 544844 ~ 545111 (+)
G456805 NA non-coding upstream 9401 534430 ~ 539694 (+)
G456800 NA non-coding upstream 53614 495235 ~ 495481 (+)
G456798 NA non-coding upstream 55288 493340 ~ 493807 (+)
G456795 NA non-coding upstream 60786 487957 ~ 488309 (+)
G456842 NA non-coding downstream 82076 632724 ~ 633919 (+)
G456867 NA non-coding downstream 166051 716699 ~ 718214 (+)
G456868 NA non-coding downstream 184539 735187 ~ 736481 (+)
G456911 NA non-coding downstream 251012 801660 ~ 801879 (+)
G456912 NA non-coding downstream 251512 802160 ~ 802388 (+)
G456774 NA other upstream 122070 426083 ~ 427025 (+)
CI01000321_03795430_03804685 SHISA7B, SHISA7 other downstream 3238670 3792915 ~ 3805511 (+)
CI01000321_04013470_04014515 CACNG8 other downstream 3455978 4013468 ~ 4015412 (+)
G459303 NA other downstream 3934749 4485397 ~ 4488552 (+)
CI01000321_04515562_04517953 MRPS21 other downstream 3964886 4515534 ~ 4518187 (+)

Expression


Co-expression Network