CI01000321_00559268_00567811


Basic Information

Item Value
gene id CI01000321_00559268_00567811
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 559268 ~ 568138 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000321_00559268_00567811.mRNA
CCATCAAAGTGAAGTTTACTCAAGGACATGTTCCCATTTCTAATGGCAACTACATTTGGACGCTGGGCTTTAATGAAGTAGAGTGCTCATCTGACCTCTCAACCACTGGGGTTCAACAACTTAAGGTCCCATTAGTGCTACTACATGGTTTTGGGGGTGGAGTGGGTCTCTGGGTGAAAAACCTATCTGCCTTTGCAGGGGAAGGAAGGCCTGTGTACGCACTGGACATGCTGGGATTTGGACGCAGCAGTCGACCAACCTTTGGTAGGGATGCCAAGGATGCAGAGGAGCAGTTTGTACAATCCCTGGAGGACTGGAGAAAGGCAGAAGGGTTGGAACATATGATTCTCCTGGGCCATGATCTTGGAGGATATGTGTCTACTGCCTATGCCCTGAAATATCCTCACAGTGGTGAGACAGCATTTAAAAACATGACAATCCCATACGGATGGCCTCAGCACCCCATGATGGAACAAGTGGAGAAGATCAGTCCCTCTCTTCCCATGACTTTCATCTACGGATCACGTTCCAGCATTGAAGGCCAATCAGGAAAAGCCATTCAAGAAATGAGACCAAATTCGCAAACAAAAATCATAGTTATCCAGGGTGCAGGTCACTACGTATTTGCAGACCAATCAGAAGACTTCAACCAGGCTGTGCTCAAGATATGCAATAATGAATGCTGAGAGAAGAGAAAACATGAGTCAGGTGTGAGTTAAAGGATAATCAAATGAAGGTGTGAAGGGAGAGATAGATGTACTATATAAGAGGAAAAGGAGGCAGAAAATATGAAGGAAAGAGTAAAAATTTCATGATCATTTATATAGCTTTCGACAAATGTGCATTTAAAAATTAATACATACATACATAACATTGTACTCATGAACTACATTTTAAAAACATCTGCTATATGAAATCAACAAAAAGTGATTTTTATTATTATTATTATTTTGGAAAATCTTCAGTACTTCTAATTAATTCATTATTCAAGCACAAGTATGCACATTGTAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000321_00559268_00567811.mRNA True 1013 mRNA 0.41 3 559268 568138

Neighbor

gene id symbol gene type direction distance location
CI01000321_00549095_00550611 NA coding upstream 8620 549095 ~ 550648 (+)
CI01000321_00511077_00516356 NA coding upstream 42912 510554 ~ 516356 (+)
CI01000321_00441382_00448773 RPS18.L, GM10260, RPS18, RPS18-PS3, GM6630, BRAFLDRAFT_114927, GM11361, RPS18P5 coding upstream 110488 441382 ~ 448780 (+)
CI01000321_00326486_00355049 NA coding upstream 204066 326393 ~ 355202 (+)
CI01000321_00283589_00284224 NA coding upstream 274931 283324 ~ 284337 (+)
CI01000321_00649226_00658653 NA coding downstream 81088 649226 ~ 658950 (+)
CI01000321_00697882_00700283 CCK coding downstream 128928 697066 ~ 700313 (+)
CI01000321_00785868_00790038 CTNNB1, CTNNB2 coding downstream 217730 785868 ~ 791009 (+)
CI01000321_00815160_00819665 NA coding downstream 247022 815160 ~ 819749 (+)
CI01000321_00844476_00879488 CPNE4A, CPNE4B, CPNE4 coding downstream 276156 844294 ~ 879693 (+)
G456806 NA non-coding upstream 14157 544844 ~ 545111 (+)
G456805 NA non-coding upstream 19574 534430 ~ 539694 (+)
G456800 NA non-coding upstream 63787 495235 ~ 495481 (+)
G456798 NA non-coding upstream 65461 493340 ~ 493807 (+)
G456795 NA non-coding upstream 70959 487957 ~ 488309 (+)
G456842 NA non-coding downstream 64586 632724 ~ 633919 (+)
G456867 NA non-coding downstream 148561 716699 ~ 718214 (+)
G456868 NA non-coding downstream 167049 735187 ~ 736481 (+)
G456911 NA non-coding downstream 233522 801660 ~ 801879 (+)
G456912 NA non-coding downstream 234022 802160 ~ 802388 (+)
G456774 NA other upstream 132243 426083 ~ 427025 (+)
CI01000321_03795430_03804685 SHISA7B, SHISA7 other downstream 3221180 3792915 ~ 3805511 (+)
CI01000321_04013470_04014515 CACNG8 other downstream 3438488 4013468 ~ 4015412 (+)
G459303 NA other downstream 3917259 4485397 ~ 4488552 (+)
CI01000321_04515562_04517953 MRPS21 other downstream 3947396 4515534 ~ 4518187 (+)

Expression


Co-expression Network