CI01000321_00649226_00658653


Basic Information

Item Value
gene id CI01000321_00649226_00658653
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 649226 ~ 658950 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000321_00649226_00658653.mRNA
GCACACCCTTGCGTTGTGGAACCACAAAACATCTTGATCTCAGCCACATCTCACAGGGGAACAGATCAGACCCACAACTTAAGAAGGGTAGAGAGGATACAAATCTCAGAATGACGATTCCGATGATCACTATGGTTGTGCTGGTACTCATCTTTGCGGAACCATGTATGGGTATGGCCTATCGACTCACAGGAAATGTTGCTTTGAAAAGTGTGACCCACCAGTCCATTGACTTGTTGAACAGTAACACCGCTTCCAATGCTGTTGATGGAAACAAAGCAACAAATTTAGCAAATAATTCCTGCACTTACATAACTGCAAAAAGAAACCCATGGTGGAGAGTTACCCTGCAACAGCCTTACAAAATTGTCATGGTTGCCATTACCAACCGGGGTGATTGTTGTGCTGATAGGATCGATGGAGCTGAGATTCGTATTGGGAACAGCCTTGACAACGATGGCAACTACAATCAGCTGGTTGCAAAAGTGTATTCTATCCAGGCTGGGAAAACACAGAAGTTCAAGTTCAGTCCCTTAGATGGACAGTATGTTAATGTGCTTTTACCAGGAGAGAACCGCATTCTGACAGTATGTGAGGTAGAGGTGTACGCAGTCTCTGAAGACATGGTAGCAATGATACAGTCTGAGGGTATAAATGTGGCACCAAATGGACGAGCTACCCAGTCCAGTGTGAATCAAGGTTCTACAGCATGTCTGAGTCTTGCACAAAATGCCATTGATGGGAACCGGCAATATGACCTATTCAAAGGCTCTTGCACTCAAACGAATACTGAAAGTGATCCCTGGTGGAGACTGGATCTGATTAAAACTTATACAATTGCATCAGTGGCTCTTACCAATCGCGGTGACTGCTGCGCCGAGCAACTGAATGGAGCAGTGGTTCACATTGGAGATTCACTAGAGTCTGAGGGCCGTGCAAACCCAGTGTGTGTTAAAGTGTCTTTCATCCCTGCGGGAGGGACAGGGAAGTTCCGGTGTGCCAGTGCTCTTCAAGGCCGTTATGTGACTGTGGCTCTTTCTGGGGAAAACAGGACTCTGAGCTTGTGTGAAGTGGAGGTGTTCGGCGTTCCAACAGAATAGTGCAGTTTTTTTTGTTTGTTTGGTTTTTTTTATAGCAGGAATATTGCAACCCACCTAATGCCTATATGGCCACCCAATAATGTTAATAATAATTTACTTTATTAATATTATGTTAAAATATTTTTTATAATTCCAATCTACTGGAATTTGAATTATCTATACCTGTTACAAATATTTGCATGAGAAACAAAATCATTGTCTTTAAATGCTCAGTAACACATCAAAATAATATTTCTCACTTTTATTTTACAAAAAGTTAATATGAATGTTCGGTCCAATTCTTATCAGCTTGTTTTA

Function

NR:

description
FBP32 precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000321_00649226_00658653.mRNA True 1397 mRNA 0.42 6 649226 658950

Neighbor

gene id symbol gene type direction distance location
CI01000321_00559268_00567811 NA coding upstream 81088 559268 ~ 568138 (+)
CI01000321_00549095_00550611 NA coding upstream 98578 549095 ~ 550648 (+)
CI01000321_00511077_00516356 NA coding upstream 132870 510554 ~ 516356 (+)
CI01000321_00441382_00448773 RPS18.L, GM10260, RPS18, RPS18-PS3, GM6630, BRAFLDRAFT_114927, GM11361, RPS18P5 coding upstream 200446 441382 ~ 448780 (+)
CI01000321_00326486_00355049 NA coding upstream 294024 326393 ~ 355202 (+)
CI01000321_00697882_00700283 CCK coding downstream 38116 697066 ~ 700313 (+)
CI01000321_00785868_00790038 CTNNB1, CTNNB2 coding downstream 126918 785868 ~ 791009 (+)
CI01000321_00815160_00819665 NA coding downstream 156210 815160 ~ 819749 (+)
CI01000321_00844476_00879488 CPNE4A, CPNE4B, CPNE4 coding downstream 185344 844294 ~ 879693 (+)
CI01000321_00887320_00899893 MRPL3 coding downstream 228370 887320 ~ 900122 (+)
G456842 NA non-coding upstream 15307 632724 ~ 633919 (+)
G456806 NA non-coding upstream 104115 544844 ~ 545111 (+)
G456805 NA non-coding upstream 109532 534430 ~ 539694 (+)
G456800 NA non-coding upstream 153745 495235 ~ 495481 (+)
G456798 NA non-coding upstream 155419 493340 ~ 493807 (+)
G456867 NA non-coding downstream 57749 716699 ~ 718214 (+)
G456868 NA non-coding downstream 76237 735187 ~ 736481 (+)
G456911 NA non-coding downstream 142710 801660 ~ 801879 (+)
G456912 NA non-coding downstream 143210 802160 ~ 802388 (+)
G456892 NA non-coding downstream 221275 880225 ~ 882441 (+)
G456774 NA other upstream 222201 426083 ~ 427025 (+)
CI01000321_03795430_03804685 SHISA7B, SHISA7 other downstream 3130368 3792915 ~ 3805511 (+)
CI01000321_04013470_04014515 CACNG8 other downstream 3347676 4013468 ~ 4015412 (+)
G459303 NA other downstream 3826447 4485397 ~ 4488552 (+)
CI01000321_04515562_04517953 MRPS21 other downstream 3856584 4515534 ~ 4518187 (+)

Expression


Co-expression Network