CI01000321_00909867_00919491


Basic Information

Item Value
gene id CI01000321_00909867_00919491
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 909438 ~ 920478 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000321_00909867_00919491.mRNA
GTATAAAAAGTTGCCATATAAAATTAAGCAAATGACATTAACAATGTACTATAATAACAAATGATTTCCTTGAGAATAAAGGGGTACATTAAGAGGATAATAAGGTCATTTATTATTTTTAGTATTTAGAGTATGAGTATAAATAGTTAATAATAGATTAATCTTCCACAAAAATGAGTGCAGTCAACATATTTGGAGACAAACAAAGTAATAAAGCCAATCTAAGTCGCTTATGTATGGTGACGTACTTCCGGTGACGTATTTGTTTTGAAGACAAGTCAAAGGTAGGAGTGTCAGGCGGATCGGGGCGTCAAGTTTTCTGATCAAATCGAGATATAATTAGCTTCGTCTTTTTAAGTAAATAAAAACAAGCTGTATTAAACTGTTGACAACTCGTGTTAAGTTGAAATAATACTTCGTGGAGGCGAAATGGAGGCCGTTCCCAGGATGCCGATGATTTGGCTGGAGCTGAAGGAAGCGGGGGACTTTCAGTTCAGTTCCCCTGTCAGACAGTACATTCAAATAAACTATGGTGAGAACCCCGAGAACTATAGTGAGTCACTGAAGAGGCTGGAGCAACTTAGACAGAGTGTGGTAAACATCCCAAGGGATTTTGAGGGCTGCAGCACTCTTCGAAAGTACTGTGGTCAGCTGCACTTTCTGCAGAGTCGTGTTCCCATGGCAGCTGGTCAGGAGGCTGCAGTGCCCGTGACTTGGATTGACATCTTCTCAGGGAGGAATATCACACATGATGATATTAACTATGAGCAGGCTTGTGTCTTGTATAACCTGGGTGCATTGCACTCGCTGCTGGGAGCTGTGGATAACCGCCTGTCTGAAGAGGGGATGAAGGTGTCCTGTACCCATTTCCAGTGTTCTGCCGGGGCTTTTGCTTACCTCAGAGACCACTACAATCACAGCTACAGCTCTGACATGAGTGGCCAGGCACTGTCAGTCAACCTCAGCCTCATGCTGGCACAGGCTCAAGAGTGTCTCTTGGAGAAAACTCTACTAGACAACAGAAAGAGTCATTTAATAGCAAAGATTTGTGCCCAGGTGTGTGACTATTATAAGGATTGTCTGAGGGTGTTGGATAATTCTGAATGTGTGCCAGGAAGGATTCAGAAAGAGTGGAGGAAACTCGTCAGCATGAAAATCAGCTACTTCAGGGCCATCACACACTTACACATGGGAAAGCAGTCAGAGGAACAGCAGAAACATGGAGAAGCAGTCGCATACTTTCAGTTCTCCCTCGACAAACTTAATGAGGCAATTAAGCAGAGCAAGGGTCAACCAGAACATATACAGGAAGCTTTGAAATTCACAATGGATGTGATTGGTGGAAAATATAACTCCGCTAAGAAAGACAATGACTTCATTTACCATGAGTCTGTGCCTGGTCTGGACACATTGGTGGCAGTAAAAGGTGCATCTTTGGTGAAACCCCTACCTGTGAACCTAACTGATCAAAGTGTCACTGGTCCTGACCTCTTCTCTAAACTTGTTCCCATGGCAACTCATGAGGCCTCATCCCTTTACAGTGAGGAGAAGGCAAAATTACTTAGGGACGTAGTGGCTAAGATAGAGGACAAAAACCAAATCCTTGAAAAATTCATGGAGTCTCTAAGCAGCGACTCGGTGTATAAAATTGACATGTTTAAGTCTCTGCCTGACGCTCTATTGGAAAAATGTGCATTTCTCAGTGTACGACCAGACACTGTCAAGAACCTCGTCCAGGCCATGCAAGCACTATCTAATGTTTACACTGATGTGGGTTCATCTCTGGATGAGATCCATAGTGCTCTTGAGGAAGATGAGGCTGGAGAGAAGAGTTTAATGGAGGTTGTGGGGCAGAAGGGATTGGCGGCCAGATCTGCAGTCTTACAGGAGATACAGAAAGAGCTGAAGAAATATGAAGCTGCTCATCAGGCAGCCAGCAATACCAACACCGAGCTCCACAGAGCAATGAACCAGCACATACCAAACCTACGCCTATTACAGGGATCTGTTGAGGAACTTCGAAAGAGCCTGCCCCAGCCACAACTCAATGAAGATGAAACATCATCCTTGCAAAAAATGAAGACTCTTCTTGGCAAAGTTGATGAAATGCGAAAGCAAAGGATCTCATTGGAGAGTCAGCTCCGTGACCTTATTCATAAAGATGACATCACGGGAGTCCTGGTAACCACAGATCGTGCTGAGATCAAGACATTGTTTGCAGAGCAGTTGAAGAAATATGATCAGCTGAAGGGATATATAGAACAGAACTTGGCTGCTCAGGATAACATCCTGAAAGCCCTGACAGAAGCAAATGTGCAGTACGCCCCTGTCCGCAAGACCCTCATGCTCACAGAGCAACAATGGAACGACACTGTGCAATCCCTAATTGCCTCATTTGAGGCATATGAGGACTTGATAAAGAAGGCTGAGGAAGGCAGAGACTTCTATCAGGATCTGGACAAGAAGACCACTGGCCTGTTAGACAAAACAAAGTCCTGTTGCCAAACCAGAGAGGAGGAGCGAGTTGCCTTGCTGGAAAAGGAGATTGGAAAAGGGCCGCCTCCTAGACCTTCTGCCCGAAAGCCTGTGGTCGGCCAGAAAGTTGTTGGTTCTAGAACCGGCCCTTCCAGTCTTGAATCTGTAGGTCCTTCTGTTGCCTCTTTTGAAGATCTCCCACAAGAACTACGAAGCCTCCCTCCAAATCTCAATTTGCCCCGAGGTCCAGTATTTCCCAATATTGTTCCCCATGGTGGAAGCCCATTTCCCCCAACTCGGTTTCCAAACCCCCAATTTCCAACTACAGATCCAAGGCAACAGCTCTCTCACAATCTCCCACAAAATCAGGCCCCTTATGGCCAGCCCTTTGCACCCATGCAAATCCCTGGGATGCCACCACAGCAGTTACAGGTAAGATCATCCGGAGGCATCACACATGTCCATCCTCAGGTTAATCAATCGAACACCCCACAGGTGCCTTCTCAGGGGTACAATCCAGCTCTCTGGCAGCAAGCTCACGGTGGGCCCATTGCTGTTACAGGGGGTTATTCTGTGCCTCCACAAATGGGACAGATTCCCCAAAATTCCATTAGGCCTGGTTTACCTGGACAACCCCAAGTATCCTTGCCAAACTCTCTTGGGCAGCAGATGCCAACTGTCATGACTCCGTCTTCCTCAGTCCAACAGATCATACAGGGAACACAGTGCCAAAGCTTTACCACCCAGCCTAGACAAAGCATCCCCTCAACCACACCAAGAAGTGTATTTCCTGGGCAAAACCTTCCCCCTTTCCCACCTGGACAGGTCCAAGCTCCTATGCCAGGCCAAACACAGCAACAGCCTGGCCTCCCCTCAGGTTACCGACCCGCATTAGGTCCTCAAATCCAACCCCAGCATGGTCTACCTAGCCAACTGTCCCATCCTCAGGGAGCCCTCATTCAAGGACAAGCTCAAACTCAGCCTCAGTGCAGTCTTTCCAATCAGTTCCATCCTGGACAACTTCCACAAAACAGGCCTCAACCTTATATGGGGTATACATCTTTTTCATCTTTGCAACCTCAGCAAATCCCTGCACCCCAACAAGTACATCCAGGCTCTCAAATCTTTCCACAGGCACCCTTGAGCCAAAACTCCCAAATTCCTTTTGGTGCTCGTCCACATAGTCAGCCCCAAATGCCACCAGGAGCTGTACCACCACAAAGTAATATGTACTCATTTGCACCAACACACATGGGCCAACAACCTATGGGACAGCAGACAGTTCCACCCCAATTCAACACCATCTTTAATGGCCCAGGGGGGCAACCCATGTACACTCCTGGTCAAAGCCAAATACTTGGCCCTCAAAATGTGGCTCACCAGACATCAGGACAAGCAGTGATGGACAATCCAGTTCCACCATCACTTGCCAGCACCCTCATTCCTACACCATCACCAGTTCAAGTTTCATCTCAGAACCAGATCTCCACTTCATCCTCTTCCACATCAGGTGCTGCTCCAACTGACGAGATGAGGTCCAACTCCACTACAGTTCTGGATTTTCTTCAGAACAAGGTGGATAATATCAGCATTAAGTCCTAAACTGGTTGTGGAGTAGATAAAAGCCTAATTCAATTATCACAGTAGTCTCTTGCCGTGTCCCACAACAACAACTGTGCAAAAGCTGTCAGTGATAGTTGGGATACCACACAGAGCACGATCAAAAATGACGGGGGTGTCAACAGGGGGTACAGAAAAAATATCTTTTTGGTGATTTGGATCCTTTGTAGTCACAACACAAGATCTAATGTCTGAACACATACTAACACTTGCCTTTTCTACATGTACAGTACTAACACAGAATTGCACTGTACTCTCTGAATCAGTAATTACAAATTCTAACTTACCAATTGTGCTACAAGCAAATAGAAAACTGCTTTTGCACTGTAATTCTATGCAATTCTCTAATATTATATGTCAAGTATCACTCTTTTTATTTCTATTCCTAAATAGCACTTTAGTCTGCACTCTTAGAATGATGACAACGATGATAAAGGAAGAGGTGATTGTGGGTGTTTCTATTTCTGTTTCAATGTATCTTCCATTGTTTCAGAAACATTTTAATACCAAAACTCTAGTTCTTGCATATAATTTTTGTGATAAATTGTAAACACTGCTTTCTTTTAGCTCTGTATTAGACCATAACAAAATTTTATAAAAAGGGAAATGCTTTTTGACTGACTTACACTACTGGTTTATGTGGAGATGATGCTTCTGTTTGAAATTCAATATTAAACTGGCTTACTTAAAAATGTTTACATGTCTACCTTTATAGAAAATTAGCAGCTTTACATACCTGGACTTGTGCAGTTGTTCTCTTAATCGTAGACCACTTCAAACTTGGTCAATGGGGGTCTTTTCCCATTGCAGTGGCATCCAAGCCAATGTTGTTTTAGGGTCCTTATTGGTGAAAGGTAAATTTTTCACTAGTCTTGTGTCCTCCTATCCAACACACCACACTCCACTTTATTTACTAAGACCATTCTTAGAAGTTTTGCAGTATGCATTCCTAATAATACAGTATACAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000321_00909867_00919491.mRNA True 5064 mRNA 0.44 20 909438 920478

Neighbor

gene id symbol gene type direction distance location
CI01000321_00887320_00899893 MRPL3 coding upstream 9316 887320 ~ 900122 (+)
CI01000321_00844476_00879488 CPNE4A, CPNE4B, CPNE4 coding upstream 29745 844294 ~ 879693 (+)
CI01000321_00815160_00819665 NA coding upstream 89689 815160 ~ 819749 (+)
CI01000321_00785868_00790038 CTNNB1, CTNNB2 coding upstream 118429 785868 ~ 791009 (+)
CI01000321_00697882_00700283 CCK coding upstream 209125 697066 ~ 700313 (+)
CI01000321_00981761_00983302 NA coding downstream 61023 981501 ~ 983955 (+)
CI01000321_00986344_00991651 NA coding downstream 65866 986344 ~ 992510 (+)
CI01000321_00994911_00997021 ASTE1 coding downstream 74433 994911 ~ 997093 (+)
CI01000321_01010375_01014716 NA coding downstream 89897 1010375 ~ 1014726 (+)
CI01000321_01065033_01086306 JAZF1, JAZF1A coding downstream 144555 1065033 ~ 1087823 (+)
G456931 NA non-coding upstream 2033 907166 ~ 907405 (+)
G456930 NA non-coding upstream 5840 903362 ~ 903598 (+)
G456929 NA non-coding upstream 22714 886475 ~ 886724 (+)
G456928 NA non-coding upstream 23623 885491 ~ 885815 (+)
G456926 NA non-coding upstream 25618 883383 ~ 883820 (+)
G456953 NA non-coding downstream 95850 1016328 ~ 1016631 (+)
G456976 NA non-coding downstream 176149 1096627 ~ 1099111 (+)
G456978 NA non-coding downstream 176596 1097074 ~ 1097710 (+)
G456977 NA non-coding downstream 179214 1099692 ~ 1160094 (+)
G456973 NA non-coding downstream 184747 1105225 ~ 1115313 (+)
G456774 NA other upstream 482413 426083 ~ 427025 (+)
CI01000321_03795430_03804685 SHISA7B, SHISA7 other downstream 2868840 3792915 ~ 3805511 (+)
CI01000321_04013470_04014515 CACNG8 other downstream 3086148 4013468 ~ 4015412 (+)
G459303 NA other downstream 3564919 4485397 ~ 4488552 (+)
CI01000321_04515562_04517953 MRPS21 other downstream 3595056 4515534 ~ 4518187 (+)
CI01000321_04748037_04748315 DPM3 other downstream 3826934 4747650 ~ 4749579 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013993 ptpn23b coding NC_007130.7 CM002903.2 19241372 ~ 19270755 (+)