CI01000321_02069556_02082569


Basic Information

Item Value
gene id CI01000321_02069556_02082569
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 2069254 ~ 2083342 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000321_02069556_02082569.mRNA
GTATAAATCCAAAAGTAACCAACTACTTTTGCATAAATAGTCAAATTTGTCATCCAGAGAATTATTTTTACACGTGAAGGAAGCAAGTTTAGGCTTTGAATATGTTCTGGAGTAGATTTACAACTATTAATTCATTCAAGTCATGGTTTTGGTGGAACTTTTCCACATGTTGGAATATACTCAATATAATAACCTGAAAGCATTATTGTTATTGAAATCAAACCTTTTGAGTATGGAACAGATTTAAGTGTATTATAAAATTAAGCCTTCCATTTCCTTCCACATCTGGGGTCCCGACGCACATGAAGATAAAGCGGTCGTGCCAGGTCTCTCTCAAAGAAGTGACTTGCTGCCTATGCGCAGATTTCGCATGCTATGAGAAAACAAAAGGTTTCAAAGCGTACATTTGTGTCTTAAAGCTCCGGAAAACACAAAGGCTCAGCCCGGTGATGGACTCGGCTGCCAGGCCTACAGATGGAGGGTCTCTACTGACGATGTCACGTCTGGGCTCACACATGCACGCTCAGAAGGACAGTGGGCTGTCCGGTGTAGCATCATTAGCTCAGCGGAGACGTGGCGGCCCTGACACATGTCGAGCGGCGTGCAGCCAACCCACGGACGAGCACGAGTCGCTCCTGCATAATTTGAAGGTTAACTGCCTTCTTGCTTGTGAAGAGTACATTTCTCACACACACTCAAGCTTAACACACGTAAGAACATTACCATCATCGCCGCGCGCAAGTTTTAACGCAGTACACCGTGCACGTCAAGCAGCAAAGCCCATTAAAGGGGTATCGGGCGGCGCGTCTCTCTCCGCTACTTTAACAGGCCTGCTCGTATGTATACTTCTGTACGAGATGTATTATCTGGCAAACAATCCACTTAATGCCCAAAGTGAAGTGAAGAGGCGTTTTTACAAGTCTGTAGATGAGCCTCGCTTTCATGGACGCTGTCCGTACTCTGATTTAGCACGCTAGCCTGCCACTTGACTGTCAGTCGGCCAGAGTAATCTCTCCCCGTCAGCTGCCAGCGAGGGTGAAGTTCATCTTTGCAATAACGTTAAATGCACTGGCGCTTCATCCTTCATGAATATGAATGGCTATATAAATAGGAAAGTTGAAGAGCAGATAGATCGGGTGGCTGTCACTTCAAACTTCCTAATCATCTCCGCTAAAAGCATGCCTTGCCAAACAACACGAGTCAGTGGGATTTGACACGAACCTTGGGAAGTAGCGCTGTTTTAGTTTGTTTTTACCACGCAACCTATCAAATGTATCTCCCTCGCGAGATTCTCATGGGACGGGTGTATCAGCTGCAACACGCTATGGCGGCCGATTACAAGACATGTCTTATCTTTGATTTTGCAGCATGTGGTCTCCTGAGGGTTTGCACCTACTGTGAACGCATAACGATTCCTAATTCATTGTAACTCAAAATAATAATTGTTGAAACTTACCGAGTGTAGGGAAATAAGGAGAAATTGATATAAATAATTATTAAGGCACATCAGCAGAGCTAGCTAGTATGTCGTCTTTAAAGAAACAATTCACCCAAATATGAAAATTCTGTCAACATTTATTCACCCTCATGTCGTTCCAAACCTGTATGACTTTCTTTTGTGTGTGTGTGTGTGTGTTTAACGCAAAAGGTGCTATTTTTATCCAATTTCGTCAATCCAAATCATATTTTAGTTACAGTAAGTCACTTTTTCACAGAAAATCTTTTGAGTCATTGAGTTGTACTCGATTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000321_02069556_02082569.mRNA True 1750 mRNA 0.43 4 2069254 2083342

Neighbor

gene id symbol gene type direction distance location
CI01000321_02060877_02067096 TSHZ1 coding upstream 1733 2060877 ~ 2067521 (+)
CI01000321_01789650_01796167 CNDP2 coding upstream 272737 1789304 ~ 1796517 (+)
CI01000321_01778626_01782120 TXNL4A, TXN4A, BRAFLDRAFT_119072, TXNL4A.S coding upstream 286919 1778626 ~ 1782335 (+)
CI01000321_01773447_01776531 ADNP2B coding upstream 292710 1773072 ~ 1776544 (+)
CI01000321_01767234_01768560 NTF2, NUTF2L coding upstream 300487 1767234 ~ 1768767 (+)
CI01000321_02205260_02210288 NA coding downstream 121175 2204517 ~ 2210526 (+)
CI01000321_02306311_02308161 GALR1, GALR1A coding downstream 222779 2306121 ~ 2308202 (+)
CI01000321_02359797_02366314 SALL3B, SALL3 coding downstream 276455 2359797 ~ 2366359 (+)
CI01000321_02371786_02421055 ATP9B coding downstream 288319 2371661 ~ 2421699 (+)
CI01000321_02433523_02469055 NFATC1 coding downstream 350181 2433523 ~ 2469069 (+)
G457307 NA non-coding upstream 26152 2030255 ~ 2043102 (+)
G457372 NA non-coding upstream 43745 2025298 ~ 2025509 (+)
G457282 NA non-coding upstream 96047 1972998 ~ 1973207 (+)
G457269 NA non-coding upstream 107504 1961457 ~ 1961750 (+)
G457262 NA non-coding upstream 116635 1952359 ~ 1952619 (+)
G457376 NA non-coding downstream 23664 2107006 ~ 2107463 (+)
G457394 NA non-coding downstream 76635 2159977 ~ 2160736 (+)
G457332 NA non-coding downstream 96447 2179789 ~ 2181161 (+)
G457396 NA non-coding downstream 108864 2192206 ~ 2192616 (+)
G457306 NA non-coding downstream 189458 2272800 ~ 2284518 (+)
CI01000321_00815160_00819665 NA other upstream 1246407 815160 ~ 819749 (+)
G456774 NA other upstream 1642229 426083 ~ 427025 (+)
CI01000321_03795430_03804685 SHISA7B, SHISA7 other downstream 1705976 3792915 ~ 3805511 (+)
CI01000321_04013470_04014515 CACNG8 other downstream 1923284 4013468 ~ 4015412 (+)
G459303 NA other downstream 2402055 4485397 ~ 4488552 (+)
CI01000321_04515562_04517953 MRPS21 other downstream 2432192 4515534 ~ 4518187 (+)
CI01000321_04748037_04748315 DPM3 other downstream 2664070 4747650 ~ 4749579 (+)

Expression


Co-expression Network