CI01000321_02771823_02809283


Basic Information

Item Value
gene id CI01000321_02771823_02809283
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 2771262 ~ 2809420 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000321_02771823_02809283.mRNA
GTATAAAAAGAGTGAGCTCTTCTCAACAAATGAGCCACTGGTGTTTGGGTTACACAGGAGTGCTTTAACAGGTATGTGAGTCTTAATTAGTCAGTGTGAAATTTGAAGAATTTCTATAATTTTCTTATTTAGCAATCTCTGATGTTTTGTAATTGACATTATTTACATAAAAATACACAAAAACATCATAAAAATATCATTATGGATTACTTTTGACCTAACAATGTTTTTTTGTCACCTTCAAAAATAATCTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAAATTCTGTATGTCTGTCTGTCTTGAATTATATATTATTAGCCTTTATTTGTAAATTCAGGGTTTCTAGTCTAGGCTTATTTATTTATCAAATGTATAGTCAGAATACTGCGGATTCTGGTCTGTTTAACATTGCAAGAGGTTTGTGCTAGACAGGCTATTATTTTAAATTGTTAACATATGTTTTATAATGTGTTATATGTGTTTATTGTTTGTGCAGAAAGTATACAGAAACTGCAGACGGCTTTGTTTTGAAGCGCGCGCACTGTGAGTCTGTCAGGATGAAGCATGTGCGACGGCAGCTTCACGTGCCGCTCACTGTTTGTATTTTACTGTGGAGTTCTACAGGAGCGCAGCGTGTCAACAAAGTGACCCCAAAGGTCGGAAGCGTCAATGGCGGCACGAAACTGACCATAGAGGGGCAAGGTTTTGCTCAAGCTAATCAGTTCAATCTCAATGCCAATGACCCAAACTTTGGCAACAGTGTGACGCTGGTGTCCCGCACCAGATCTATTCCCTGTGATGTCGAGAAAGACTCCACTCACTCCAGTCAGATCATGTGTTACACAAGAGCTCTGCCAGAAGATGACTATGAGGTGCGGGTCAGCGTGGATGGTGTGCCAATTTCTTCCAGCAACATTTGTTATGGATATCAATGGAGTTACTGGTGCATGTTCTATGTAAAGCCGAACATACTATACACCCACCATTCAAAGTATCAGTCCACTCTCAGGTCCCCCAGGGCGTACATGGGAGGCATGCCTTGTGTACTTCTAAAACCCAATTCAGATGAAAAGAGCTTGCCAGACTTTGGGGTTTTCAGCATCTCAGCGCTGAACAAGCTTGCCATGTTCCAGACATACGCAGAGGTTACAGGAGTTTCTCCCTCTGAGGGCAGCATATTGGGCGGCACATTACTGACCATTCAGGGACACTACTTTGATGAGACTGACAAGCCAGCCATGGTCTTAGTAGGAGGTGGCAGAGGCTTTAAAATGGAGAAGTGGAGCAAATCTTCTCCAAACCTTCTAGAGGACGTCCTGAAGTATAATTCCAACAGGCCTGGATATTCCGTCCAGTGGGTGGATTCGCTATCTTATGTGTGGCCCAATGAAATTGATAACTTTGTGGCACGATTGAGTGGTTTCTTTGTTCCAACGGAGACTGACAACTACTATTTCCGAATCAAAGCAAATTACCAATGCCAGCTATATTTCAGCAAGACAGGTCTTCCCCAGGATAAGGTTAAGATTGCATCACAGCCTTACTATACAGGCAGTTTCTTCAGCTATAGCACCCAGAGGTCAGACGTCATGCGCTTAGAGAAGGGAAAACCATACTACATTGAGATTCTAGTGCAGGGGTATGGAGGAGCAGCATCAGTGGATGTGGCCTTTTTCAAAGAGATCAGCCCTTTCACGGCCCAGCAGACGATAGAAGCTGTTAATGAGAAACAGCAGATTAATGCAAACTATGATATACTTCCTGAAAAACAGGTGGTTCGTTTTGTGGGATGGACACCAATAACCCCCATCAATGAGGTGCAGACTCTGAGAATCAGCAGTAATTGTTTCTCACTCAGCAACTGTGAAAACACATACTACTTCCTGGCATATGGAGATCTTATAACAGGGCCGATCCCAGTTAGTGCATCAGCGATGGAGTTGCAGAACGCCCTGAATGATTTGTGGACGATAAAACCAGACAATGTTACAGTCACAAAGCAAGAACTGAACAATGAGGCACTGTATAATGTCACATTCAACTCTAACAGAGGTGACTTTGAGGATCTTGACTACTTGATCATGGGCTCAGATACGAACATCACGGTTACTGAGGATGTGAAAGGCCAAGCCAGCATGGAGACGTTCACACTGCTGTGGGAGATGCCGACCATGGAGAACACTAATGTGAAATTTTTCAGAGATTATGAGACCACCACCACAGGGAGCTTTCTCCTTATCAAACAGTTTTCAGGTGATCTAAGCCGCAGAGGGGTCCGTGTCACTTATTCTGAGGCTTTCTGTGGTCGCTGGTCTCTGAAGAATCCAGAGATTCTCTTCAATGTCAATGACATTACAGCATCCGGAGTGATCTACAGCCCAATACTGCTACAAACATACAACACTCTGTGCTTGGCCTACAAAGGGCCCTTGGTGAATGAACTGGGAATATTGTTTAGTTACCTGGCTTCAAATAATTACCGGGAGGTGAACATACGCATCTCTGTGCAGTTTGACTCAACAGATAAGTGGAACTACAAGTGTGTGGATCTCCTGAGCTCCATACAGACAAAATACATAGGCTCCAACTACAATCTTCTTCAGCTCAGTGTGTATGGAGAGGCTGCTAACTCTGTTTACTTCATAGACGTTGTTCACATTGGACGTGCAACGACTGCTTTGGATTCTAATGTTATAATCCACAGAAGAAGATCACCTGCTCTAGCCAGTTCAGGACTTTTCTTTTCAAACATAATTGTGAGCAAACAAGCAAATGCTTCGCAAGTCAGCTATGAAATCACAGCGACACCTTACAACTGTGGCTTTGATGTCCCACTGTTTGAAATGGGCTTTCTGGAGAAAATGCCAAACAGCACAGGAGACCTACTGATTCAAAGCCAAGGGAATGCCACTGTCACCATTATGCGCCCTCAGAAAGCCAGCCCCCCTCTTACAGGAACCTTTGACGTTGAGTTCTTAGCCCGGCGTGTTGAAGGCCTGGCGGTAAACATCAGCGCTGCGGACCTGCAGTACGCCCTGCAGGGGATCCCAGAGCTCGGCCAGCTTCAGGTGCAGAGATCTGGAGACTGTAGAGGCTACAGCTGGAACATACAGTGGCTCACCATCCCTGGAAATCAGCCTCTGTTAAAGATCAATGCTTCCAGTGTGGTCGGTGTGAACCCTTCATTGACATCACGCAAGATTGAGCAAGGAGGCCTCTTTAAACAAAGAATTATGGGAGACTTTCTACGTGTGCCTACAAATAAACCACAGGTGGAAGTTTTCATCAATGGTATTCCATCATGGTGCTCAGGAGACTGTGGTTTCACCTGGAGTGAGTTAAAGACCCCAACAGTGACCGGGATCTTGCCTACAGAAGGATCCAGCGATCTGGGAACAGTTCTTACTATAACTGGATCTGGTTTTGATGGTGGAAACGTCACTGTAAAAATTGGAGATGTGGAATGCTCTGTTCTACAGGTTACCAATACTTCTATAACCTGCCAGGTCGGCCCGGCAAGTGCAGGTGTACAGCCAGTCTCTCTGAGTTTCTCTGTGCTGGGAAATGCCCAAAACCAGAATAACAACAGCTTTAACTTCACACACCTGTTAGGAGTGACCTCCATAAACCCCACAACAGGAAGTGTGGCAGGAGGGACGATTCTGACAGTGTCAGGCTATGGATTCAGTAATGATACTGCAGTCACCATTGGCACTCAGCCATGTAACATTATAGAAGTGGAACTTTTCCAGCTGAGATGCATAGTTCCAGCTGGGTCAGAAGGTGAACAGACAGTAACAGTGACCACGGCAGAGATGACAGCAATATCAAATGGCTCCTTCACATACAGCGACACTCTGATGGCCATAATCACATCTGTGAGTCCACAAACTACAACAGTATTTGGGCGCAGGATTCTCACCATCTTGGGCATCAATTTTGAGGAGCAGGCTAATGGCAGTTCTGTTTTAATTGGTGAAGCTGAGTGTGAATTGCTGCAGTGGACCGATGAAAGCATTACCTGCCTGTTACCCACACTTCCCCCAGCTTTGTACAATGTCCGTGTGAGAGTTGGAAACCAGGGTTACTCCTTAACCAGTGCTGACGTTAATACCACCGTAGAGTATGTTCTAGAGGTCACAAGTTTTTCTCCATCTCTGGGGTCCTTGTATGGTGGAACCACCATCACTATCACCGGCTCCGGGTTCAGTCCTGTCGCAGCAGACAATAATGTCATTCTAGTGTACGGTCAGGGTTACGCCTGGAGCCCCTCTGCAATAATAGCCTCAGTGGGGGATACAGTGGTTTGGCATTGGGACACACCAGCTTTTGTGGCCGGTCTGGGCTACAGGGTCTTCAGTGTGTCCAGTCCTAGCAGCACAGACTATGATGGCATTGCTTTCAGCAGTGGAGACACCCGAACCGCCAAAGGAACTGTAGAGGACAATAAGAGCGAGAGGCCTGATGCCAGTTTGATTAAGGAGGACAAAAAATCTGATCCTACAGTTCTTGCTGTGTCTGTTTTATTGTTAGGGTTTTTCGCCTATCGTTTCACATCTCCTGGAGTTTACTACTACAGCAGCGGTTACATTGACTCTGGCAACCAGAAGACGCTGCAGGGCGTGGTGACCGTTATGCCTCTGGAGGAGAGCACTGTTGGGCTTCAGGTGTTTGTGACAGGAATACAGGCCTCTATGAATATAGACACAATTACAGGCTATATTCATCAGCTGGAATTTTATGACACCACAGACAGTTTCTACTTCAGTTTTACTTCCTGCGCCAGCCCCACTGTGTACAACATTACGCCTAGCCATGGCACCACACATGACATCATCAGCATCAGTGGATCTGGCTTTAGCAACATTAACTGTGCAAATGAGCTCTCAGAACTACATGGAGTAAACAAAAACAAAGTAAGTGTATTTATGCACCTGCTGCCTTTTGATGGTGAGAAGTACAGACTAAACAAAAACAAGACTCAGGAGAGTCAGATCCTGATTTTGTTGTGGCACCCTCATCATCCTCTCCAGCTTCCACTGAAGGCGAGGAGGATTCAGAGGATCCTGGATCTGGGTGGATTGGGAGAAACGGCAAAGTGTGGTTTTCCACCAACGTGGAGACAACTCCCTTTCTTCAGCCTGCCAGAGGCGTGACTCCAGGGCGCGTTATGCCATCGCAAGGGTCCAGAACGTGGACTGTTTTTTACGGAGGAGATGATTGACCTCATTGTCAGCATGACCAACCTCCATGGGTGCCGCACAATGAGAAACTGGAGTTGTTGCATTTCATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000321_02771823_02809283.mRNA True 5297 mRNA 0.45 34 2771262 2809420

Neighbor

gene id symbol gene type direction distance location
CI01000321_02720431_02722463 TRHRB coding upstream 48136 2720234 ~ 2723126 (+)
CI01000321_02627263_02629887 NA coding upstream 141337 2626614 ~ 2629925 (+)
CI01000321_02515869_02522379 NA coding upstream 248778 2515346 ~ 2522484 (+)
CI01000321_02508568_02513821 NA coding upstream 257355 2508568 ~ 2513907 (+)
CI01000321_02433523_02469055 NFATC1 coding upstream 302193 2433523 ~ 2469069 (+)
CI01000321_02818757_02870940 PKHD1L1 coding downstream 9181 2818601 ~ 2871180 (+)
CI01000321_02880629_02932511 PKHD1L1 coding downstream 70638 2880058 ~ 2932742 (+)
CI01000321_02934935_02935222 NA coding downstream 124546 2933966 ~ 2935348 (+)
CI01000321_02940651_02989599 PKHD1L1 coding downstream 130087 2939507 ~ 2989828 (+)
CI01000321_02990787_02993368 GDF6B coding downstream 181367 2990787 ~ 2993399 (+)
G457557 NA non-coding upstream 101100 2669730 ~ 2670162 (+)
G457556 NA non-coding upstream 101712 2668988 ~ 2669550 (+)
G457555 NA non-coding upstream 102480 2668271 ~ 2668782 (+)
G457554 NA non-coding upstream 103629 2667410 ~ 2667633 (+)
G457506 NA non-coding upstream 168653 2601863 ~ 2602609 (+)
G457637 NA non-coding downstream 30956 2840376 ~ 2841152 (+)
G457674 NA non-coding downstream 193508 3002928 ~ 3092289 (+)
G457663 NA non-coding downstream 209774 3019194 ~ 3047906 (+)
CI01000321_03015961_03021973 NA non-coding downstream 210635 3015075 ~ 3022172 (+)
G457682 NA non-coding downstream 218564 3027984 ~ 3033093 (+)
CI01000321_00815160_00819665 NA other upstream 1948415 815160 ~ 819749 (+)
G456774 NA other upstream 2344237 426083 ~ 427025 (+)
CI01000321_03795430_03804685 SHISA7B, SHISA7 other downstream 979898 3792915 ~ 3805511 (+)
CI01000321_04013470_04014515 CACNG8 other downstream 1197206 4013468 ~ 4015412 (+)
G459303 NA other downstream 1675977 4485397 ~ 4488552 (+)
CI01000321_04515562_04517953 MRPS21 other downstream 1706114 4515534 ~ 4518187 (+)
CI01000321_04748037_04748315 DPM3 other downstream 1937992 4747650 ~ 4749579 (+)

Expression


Co-expression Network