CI01000321_02818757_02870940 (PKHD1L1)


Basic Information

Item Value
gene id CI01000321_02818757_02870940
gene name PKHD1L1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 2818601 ~ 2871180 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000321_02818757_02870940.mRNA
CAATAAAAGGTCAAAGTTGGAGATCGTCCATGCAACATAATCAGCAGCACCTCCTCTGAGATTAACTGCCAACTCAGTCCTGACAGTGGAGTACCAGTGGGCATCCCCTTACCCGTAAGTGTCCGAATCAACAACCTTGGCACCGCCATCCTGTCCATGCCGAAAGAGTACGATCGCAGATTTGTAGTTCTACCCGTGGTCGATTCCGTCTTTCCCTTGGTGGGCAGCACCACAGGCTACACACGTGTCTTCATCTCTGGTTCTGGATTCTCGAATGGTTCAGTTACGGTAGCAAACATTCCATGCAATGTGGTTTTCATGAACTACTCCCAAGTGGTGTGTGATACCTCGCCATCTGCGGCACGCAGGGGAAACGTCGCAGTTTACGTCAACTCCATCTCTTCCTCATGCAGTTCTGATTGCACGTTTGTATATTCCGACTCCATCGCACCATACATCTCCAAAGTGCTCCCTAACTCGATTAGTGGAAACGCCACCACTGTTGTGGTCACCGGCAGTGGATTTGGGAACAGTTCTGGTGATTTAATGGTATCTGCAGCCAACATCCTGCTGGAAGTCACAGAAGTCACCGACAGCAACATCAAGGTTTTAGTTGGAGCCCTTCCCGCTGGCACGCACGTCCTACAGGTGGTGGTCATGAGCAAAGGTCTTGCCACTGGAGACGCCACCCTGACCAGCATAGCACAAGCCAGCGTCTACCCAACATCAGGTAGCATTGCTGGAGGAACTCCACTCTTGATCACAGGAAATGGCTTTGTGGCGGGAAATACAACTGTGAAGCTCGCTAACTCCCCCTGCAGAATTTTAGATGTGACTCCAGACACGGTGAGGTGCATGACACCTCCTCATGCAGAGGGACAGGTGCAGTTGTACATTAAGGTGCTTGCTTATGCTTATCCACTTCAACATCTCAGCTACTCCAGGGAACAAACTCCAATCATCATCTCTGTCAGTCCTATAACAGGTCCAGTTGGAACAGAGATCACTGTCTCTGGTTCTGGCTTTGGCACAGATGTAGCGCTCATCTCCTTAGAGATTGGCGGCGTGGCTTGTAGCGTGACATCCATCACAGATACACAGTTGCTTTGCACTGTTGGGGAACATGCTGGAGGAACTTTCCTAATCATGTTCCACCATCAGGTCAAAGGTCAAGCCTTGAGTCACTCTGTCTTCACCTATGAGCTGCTGCTGACAGGGGTCACACCAAATGAGGGAAGCTACGCCGGAGGAGCTGTTGTTGCCATTCAAGGCTCTGGATTTGACCCAAACATCACCAGAGTCCTTATCTGTAACAGAGAGTGTAACGTGCACCGGCAGAGCTCCACATCTACCCAGCTGAACTGCGAGTGCAAAGTTTTTTCTGCAAAAGTGAAACACACCAGAAATGCTTTAACTGACAGAAGTCAGTCACTAAGAGACAATGACAAATGTGACAGCTCAGAAACAGGAAGTGAAGCAGAGCGGGCCTGCACAGTCATAGTGATGAATGGTGGTGACGCCGTCAACCTCACGAACAGCTATACTTACAGATCCTCTCTGACCCCTGTTATCACCAACGTTACACCACGCAGAGGAGGAACCGCTGGAGGCACTAGACTCACGATTACCGGCTCAGGTTTCAGCTTAAATGTCAGTGAAGTCACCGTCACAATCGCAGGGTCTGTCTGCGATGTCCAGTCAGCCAATGAGTCGCAAATCATCTGTGTGACCAACTCTCAGCCCAGATCCCAAGAAACTCAAGTGCGAGTCCAGCTGGGGAACAGAGGAATTGCCAGAATGAATAATGTTACCTTCTTCTACATTGACGTATGGTCATCTCCCTATACATGGGGTGGTCTCTCCCCTCCTGAGGAGGGCACGTTTGCCATAATTACTCCTGGCCAGACCATCCTCCTGGACACCAGTACCCCAGTGCTTAAGATGCTCCTTATCCAGGGCGGGCGACTGATTTTTGATGAGGCAGATATTGAGCTGCAGGCAGAGAATATTCTGATTACAGATGGTGGAGCACTGCAGATCGGAACAGAGCAGGCGCCCTTCCAGCACAAGGCCATCATCACACTGCATGGACACCTGCGTTCTACAGAACTCCCTGTCTATGGCACCAAAACCCTGGCTGTCAGAGAAGGGGTGTTGGATCTGCATGGAATCCCTGTCCCTATGCCGTGGACTCGCCTTTCTCAGACTGCACAAAATGGCTCCAACACGCTGACACTGATGGATGCCGTCACCTGGAAGACTGGCGACGAAATTGTCATCGCTTCCACGGGGCATAGACACAGTCAACGTGAGAATGAGTTGATGAGAATTGCCTCAGTTTCAGCTGACGGTAGGACCCTCACTCTGACCGAACCACTGAGATACACTCATCTGGGTGTGTCTGTCACACTGCCTGATGGGACAGTTTTTGAAGCGAGAGCAGAGGTGGGCCTTCTTACCAGAAACATTGTTGTTCGTGGATCCAACAACGTGGAGTGGAACGATAAGATTGCAGCCTGCCCTGATGGATTCAACACAGGGGAATTTGCCACCCAGACATGTTTCCAGGGTAGGTTTGGAGAAGAAATAGGAAGTGACCAGTTTGGTGGCTGTATCATGTTCCACGCACCACAACCGAACCAAAATCTGGCAGTTGGCAGAATTGAATATGTTGAGCTCTTCAATGTTGGACAGGCGTTCCGTCTGGGACGCTACCCAATCCATTGGCATCTAATGGGTGATGTTAAGTTTAAGTCATATGTGCGTGGATGTGGCATCCACCAGTCCTACAATCGTGCCATCACCATCCACAACACCCACAACCTGCTGGTGGAGCGTAATGTCATCTACAATATCATGGGCGGAGCCTTCTTTATTGAGGATGGCATTGAGACTGGCAACATCCTGCAGTACAACCTCGCGGTATTTGTAAAACAGAGCACCAGTTTGCTGAATGACGATGTAACTCCAGCAGCATACTGGGTCACCAACCCTAATAACACCATTAGGCACAATGCTGCTGCTGGTGGGACGCACTTCGGCTTCTGGTACCGCATGCACGATCATCCTGACGGCCCTTCGTATGACACCAACATCTGTCAGAAGAGAGTACCTTTGGGAGAGTTCTTCAACAATACGGTGCATTCGCAGGGTTGGTTTGGCTTGTGGATCTTTCAAGAGTTTTTCCCCATGCGTTCTGGCAGCTGCGGCTCCTCAACACCAGCGCCAGCAGTCTTCCGCCGGTTCACTTCCTGGAACAACGAGAAAGGTGCCGAATGGGTAAATGTAGGAGCAGTTCAGTTTAGCGAGTTCCTAATGGTCAATAATGAGAAGGCAGGAGTGGAGGCCAAGAGGATCATCCAGTTGTATGTCAGCGGATGGGGACTGAATGGAGGGGCAGCTGTGGTCAACAGCACCATGGTGGGTCATGTGAATGAGCTGGGGCTGGGGAGCAACTATTGCACTAATCGTGGTGTTGTCCTGCCCCTGGATGATGGTATGAGCATCATCAACACCAAGTTTGTAAACTTCGACCGTCCAATGTGTGCTGCAGTCGGGGTGGCAGAAGTAGTTGGAACCTGTACATCCCGCTGTGGAGGCTGGAGCGCAAGATTCAGTGGGATCCAGTACTATCAGTCGCCCAACAAGGCCTGGTTCAGATGGGAGCATGAGGTGGCGCTGGTAGATACTGACGGGTCCCTGACAGTGTGTGACAACACCATTAACTTCCACCGCATGGTCGTCGTCAATCCCTCACCATCTTCACTTCAAGCTAATAATGTGATTCTGACCAACTCATTTGGGTCATGCGTACTTCCTTTCCTTGATAAACTTGTAACCCACACATTTGGCTGGATGGCATTGCTGCCCACAGGCCAAACCTATAACTGGTATTTTAATGGTGCTTCCCAAATCACCAACATCTCATACACAGGCGTGGTCTACGGTTTTCAGCCAGAAAATTATATAATCATGAATCACAACCTGATTCAGACACCTGACAGCTTCCGCATTATAGATGACAGGAATGGTTCCACCCAGCCCCTGACCCCCACTGCAAATGTAAATGGGGACTGGTACTTCAACCAGTCATCCAGAAGCCTCTATTACATGGTGTCTGGAAGAGATCATATGACTAGCCGGAGGAGGAGGAACAGTGTGGATCGCTCAACTGTAGACAGATGGTTGAACTTCAGAGTGTATCAGTGTTACTATCCCAAATGTATTCAACCTATCCCTCCACCTGTTCCTGTAGTCACTCCAACCAACACAACTGGCCGCAGACCTGCAAACTTCATCTATGTGCTGAAAATAGTTGGAGTTCTGGAGATTCCAGACACAAACACCTCCTCCAGCAGTGTTTCTCAATATAATAACATTGTTCTAAATGCCACACACATCTCCATTCAAGGTGGACGTTTGATTGCTGGGTGGCCTGATGAACCCTTCAGAGGTCAACTACAGATCATACTGAGAGGAAGCCATTCCACACCAGACTGGCTATTACCATCGGGACCAAACCAAGGGTCCAAAGTGCTGGGTGTGTTTGGATCTCTTGATTTTTATGGTATGCCACACAACGTGTATCACACTAAACTGGCTAGCACATCCAAAGCAGGAAACCGCACTCTCTCTCTACAGGAATCTGTGGACTGGAAGGTTGGGGAGCAGATCCTGCTGTCCACCACCAACTATGACCCTTCACAGACAGAAATCCGCACCATCACTGCAATCTCAGATTATAACCGCACACTGACTCTGGACCAGCCTTTATCATACACACACATTGGGGAGAGCTACAGTGTGCCAGGTACTTCAAGAAGTTATCAGCTTGCAGGCAATGTGGCTTTACTGACCAGAAACATCAAGATCATTGGTCAGGAGTATCCAGAAATGTACACACAGTCTTATGGAGCCAGAGTGCTGGTGGGGAGCTTCTCCAGTGGAGGAAATTATTACAGAGGAAAAGCCCAGATCAGAAATGTTCAGTTCTACCACACCGGGCAGGAGGGATGGAATGACGTGTCTGACCCACGTTACTCTCTGGTGTTTTATAACCTGGGAGGGGTGGCTGGTGAGTCTTACATCAAGGGATGTGCTTTTCACGACGGCTTTGCTCCTGCTATTGGTGTTTTCGGAACAGACGGACTGAGTATCGATGATAATGTGATCCATCACACTGTTGGAGAAGGAATCAGAGTCTGGGGTGACAGTAATGTCATCCGGAGGAACTTGGTTACCCTGACACTGTGGCCTGGATCGTACAAAGGCAGAGCAGAGGAATTCAACTTTGAATGGAATGCAGCCATTGAGGTGAGTGAGGGAACCAATGCAGTTCTTCAAGGGAATGTTGTTGCTGGCTATGAACGAGTGGGATTCCGAATTGATGGTGAACCATGCCCAGGATCTCCAAATTCAGTGGCTCAATGGAGTCAGAATGAGGCACATGGTGGTCTGTATGGACTCTACATGAATAAAGATGGACTTGCTGGATGCTCTCAAATCCAGGGCTTCACTGTCTGGAGGAGCTTTGATTTTGGCATTTATGTTCAAGTATCCATGAACGTGTTAGTTTCTAACGTGAGCCTGATTGATAATGGAATGGGTATCATGTCTCTAATCTATGATCCTCCCTCACTCAGCCACACATACTCTGACAAAATAGTCAGTGTACAGGGTGCTCTGATTGTGGGCAGCAGCCCCAACTTCAACTGTTCTGACAGTCTGTCCACAACTATGACCTACGTTATGCTCAGCAAAAGCCACAGAGCCCCACGCCCCCCCAATGGTGGAAGGTCTGGAATTTCCTGGCCGACATTTGAATCTGACCACAATAATGCACCACAAAAGCCTCACGCTGGATTGATGAGCTACAATGCCATAGCTGGTCTAATGACTGTCTATGACACAACTTTTGTTGGGTTCAAGAATGTGTGCTCAACAGAGACAAATTACATGTTTATGACCAACCCGGGAAATGAGGATCTACAACATCCAATCAGTGTTGAGAGGATAGCCAAGATAAACAGCACAGAGGACGCTCTGGCATACATTCATCGGCCTGATCTGGGCAAGGTGAACCCATCAGACTGTGTGGACATGGACTGTGATGCTAAGAAGAAGACGATGTTGAAGGATCTGGATGGCAGTTTCCTGGGTGCAGTGGGAGCAGTGGTGCCCCAGTCCGAGTACGAGTGGAACGGGGATCCCAGACACGGACTGGGCGATTACCGCATCCCCAAAGTCATGCTCACCTCTCTCAACGGCAGCCGAATACCTGTGAATAAAATCGCTCCTTACAAAGGTGTGATCAGAGACAACTGTACGTACATGAACACCTGGCAGAGCTACAAGTGCTTTGGGCTCAACTACAGGATGTTGGTCATCGAAAGTATGGACGCAGACACAGAGACCAGGCGTCTTTCACCTGTAGCCATCCTGGGGGACAAATATGTGGATTTGGTGAATGGCCCACAAGACCACGGCTGGTGCGCCGGCTACACGTGTCAGAAGCGAGTATCTCTCTTCCACGCCATTGTGGCCACTAATAAATCCTTTGACATCTACTTCACCAGCACAACACCACAGAAGCTGAGACTTATGTTACTGAATGCTGGACCTACAGAGGCTGTCAGGGTGGCTGTATTTTACTCAAACCCTCAGCGGCTGGATGTGTATGTTGGCAATAGTTTGGTTGGTCCAACAAATGCTCAGTGGAATGCGGACAAAACTGACTACACTCTGCGTGAGCCAAATTATACAGGGCAATACATTCCCAGTTTCAACTCCAGTCATGGCTCCAACTTCTTTGACCAGGACTACAAAATGCTGTACATACTACTTCGTGGATCAGAGCCGGTCCAAATCCGCACCTCCCCGGTTTTGTTCCTGGCCTTCAACCTCCCAGCCATGACTGAGGCGGAGTTCTTTGGTGCAAAACTGATCACCAATCTGGCTTTATTTCTGAAAGTACCAGCGAACAAGATTCGAATCACCAACATTGTCCGTGAGGGTACTAATGCGAGGAGGCGGCGCTCGGCAGGACTGACGGTGCAGGTAGAGATCAGGGAGCCCCCTGTTCAGACATCCACCAACACCACCACTGAAGGAGATCAACAGTTTGAGGTCCTGAAGAACATTGCTGACGATCTGGGCCGTGCTGCTGTCTCGGGCAATCTGAGTCAGTCCATCGGCTTCAATGTGTCATCCCTGGGGATCATCCCTCCTCCACCCTCTTCCAGTGACCCATCCTGGAATGATCTGGCCACTCAGGAGGTGACCCGTGAAGACCAGCAGGTGGAGACGGTCAAGACTGTATCATCCCTGATGGTGGCGGTCCAGCCAGTGGCTGGATCGTCACTCGGACCCCTCAGCATTCAGCCCAGCATCATGGCTCTGGATGCAGCGGGTGACTGTGTGTCCGTGGGTGTGACGACTCTAACCATCTCAGCTGTGCTCAAAGATGCTAATGGGAATCCAACAGAGGGGCTTTACGGAAACACCACCATCCCGTTCAGTGGCTGCTGGGCAAATTACACTGACTTAGCCATCTTTACAAGTGGTGATAATTTGACGTTGGCCTTTACTCTGAATGAATGGAAAGCTGAGTCCAGATCTTTTACGCTCAGATCACCTACAACGCCCATATCACCTACAACGCCGTCTTCTGTGGTCGTCACTACGGACTATGACTTTCCCAGCATCTTCGACTCCAGTCCAGCTGTCTCATCACCACCTGTGTATCTGCTTGTGATTTTGAGTGGTCTACTCCTCCTGCTCAGGGGACTCTAGAAGCAATTACAACCAATGAAGAAGTCCACTCTTATGCTTATAATATATACATCATCTTCTAATGATTTGCATTGGTCTATATATTTCTGTTGTTTTCTCATATTATCATGATCCGTAAGCTACAACTATTCTGAGACTGTAGAACAAAAACAACTGTTTTTGACAAGTTTTTTTTATTTAAATCTATTCCTATCATTTACTTTGGAATATTATACATTTATACACTTTCTTATATGCTAA

Function

symbol description
pkhd1l1 Predicted to act upstream of or within sensory perception of sound. Predicted to be located in cytosol.

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000321_02818757_02870940.mRNA True 8031 mRNA 0.49 39 2818601 2871180

Neighbor

gene id symbol gene type direction distance location
CI01000321_02771823_02809283 NA coding upstream 9181 2771262 ~ 2809420 (+)
CI01000321_02720431_02722463 TRHRB coding upstream 95475 2720234 ~ 2723126 (+)
CI01000321_02627263_02629887 NA coding upstream 188676 2626614 ~ 2629925 (+)
CI01000321_02515869_02522379 NA coding upstream 296117 2515346 ~ 2522484 (+)
CI01000321_02508568_02513821 NA coding upstream 304694 2508568 ~ 2513907 (+)
CI01000321_02880629_02932511 PKHD1L1 coding downstream 8878 2880058 ~ 2932742 (+)
CI01000321_02934935_02935222 NA coding downstream 62786 2933966 ~ 2935348 (+)
CI01000321_02940651_02989599 PKHD1L1 coding downstream 68327 2939507 ~ 2989828 (+)
CI01000321_02990787_02993368 GDF6B coding downstream 119607 2990787 ~ 2993399 (+)
CI01000321_03015961_03021973 NA coding downstream 143895 3015075 ~ 3022172 (+)
G457557 NA non-coding upstream 148439 2669730 ~ 2670162 (+)
G457556 NA non-coding upstream 149051 2668988 ~ 2669550 (+)
G457555 NA non-coding upstream 149819 2668271 ~ 2668782 (+)
G457554 NA non-coding upstream 150968 2667410 ~ 2667633 (+)
G457506 NA non-coding upstream 215992 2601863 ~ 2602609 (+)
G457674 NA non-coding downstream 131748 3002928 ~ 3092289 (+)
G457663 NA non-coding downstream 148014 3019194 ~ 3047906 (+)
G457682 NA non-coding downstream 156804 3027984 ~ 3033093 (+)
G457667 NA non-coding downstream 164788 3035968 ~ 3037665 (+)
CI01000321_00815160_00819665 NA other upstream 1995754 815160 ~ 819749 (+)
G456774 NA other upstream 2391576 426083 ~ 427025 (+)
CI01000321_03795430_03804685 SHISA7B, SHISA7 other downstream 918138 3792915 ~ 3805511 (+)
CI01000321_04013470_04014515 CACNG8 other downstream 1135446 4013468 ~ 4015412 (+)
G459303 NA other downstream 1614217 4485397 ~ 4488552 (+)
CI01000321_04515562_04517953 MRPS21 other downstream 1644354 4515534 ~ 4518187 (+)
CI01000321_04748037_04748315 DPM3 other downstream 1876232 4747650 ~ 4749579 (+)

Expression


Co-expression Network