CI01000321_03319309_03319938


Basic Information

Item Value
gene id CI01000321_03319309_03319938
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 3318603 ~ 3321335 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000321_03319309_03319938.mRNA
AGGGAGAACACAAGAACACCCATCCTGAAAGAAAACACTGGGAAGGAAACACGAACAGAGGGGAAAGGGAAGAATCTTATAAGGTAAGAAACAGATTGTATATCTCTTTAAAAATGTAATGCTAAAGGGCTAATCAACTTTTAAAAAAGTCATTATTAAGATAACATGTGAAATAATAACAAACTTTATAGCACCTTTCATGCAGTTCAAAGTCTTTACAATAAAAAAAGTATTAAAATTAGCACCAAGTGCTTAAATGAAAACAAGTAAAAAAATACCATAATCGATATAACAAAAGATTAAAAATGAAACTCACTTTATGATAATAAAAGATACAATTATTCTGCATTAAATGTATAACAAAAAAAAAAAAGGAAATTAAAAACAAATAATAAAAGACAACACAATACAATACATATATAGCTGTATATATAATATATAGCTGGCTTTATTATAATATTGGTAATATATTCTAAACACACAGCTATATGCCACGTTGTATGCCAAATGCTGCAAAATTGGTAACAAAAAGATGAGAATAAGATAAGAATGAATATGCAAAGCAATATTTCAGAGGATTTTTAGACAATCCCCTTTCTATTTGATAAATGTTTTCTAGTAAACATCTTGTAGCGTACTATTTTTATCCAGCATTCAATAGTAACAATAATCTGATCTGACATTCTGATAACATGTAACTTTAATGGTCCTGTAATGGGCCATTCTGCACTGCATATGCTCAACTAGATATAAAACTGTTTTTTGAAATCTCTAACAATACCAAACGTTTTTTGTTTCAACAAGCACACACTATTTTTTCATAAAAGCATTTTCAAGAGTGATACAAGCACTCCCTGTTGTAGTATTCTTACAGTATCCTTTTTATTATTAGTGGAATAGAAAATGACAATTATTTTGATGTGATTTTAATTGCATATAAATGCTTAAAGGGACAGTTCACCCAAAAATGAAAATTATGTCATCATTCACTCGCCCTCAGGTTGTTCCAAACCTGTATAAATTTCTTTGTTCTGCTGAACACAAAGGAAGATATTTTGAAGGAAGTTTGTAACCAGGCCGCTTTGGGGCACCACTGACTTCCATAGTAGGGAAAAAAAAAAAATACTATGGAAGTTAATGGTGCCCCAGAATTGTTCAGTTTCCCACATTCTTCAAAATATCTTCCTTTGTGTTCAACAGAACAAAGAAATTTATACTGGTTTGGAACAACCTGAGGGTTAGTAAATGATGACAGAATTAAAATTTTTGGGTGAACTATCCCTTTAATTACAAAGATATCATCAGTAGCTCACAGTAACTGAATCCTATCATTCAAATTAAATGTTCATTTGCTCATTTACCCTCTATTTTTTCTTCTAGACATGCAGACAAGCGAGATGAACGTTTTACTAGCTGTGTTTTGTGTGGTGAACATCCTCCAGCTCTGTCATGGAGTATCGAGCAGTGGAGAATGCTACTTCAACGCCAAAGCCAGCTGTGAACACAACGGCCGTGTTTTCGACATCGGCGAGGCCTGGATAAATGACGAATGTTTCCAGTGTGTGTGTTTCGAGCCTTTTGGAGTGGGCTGCTGTGAACATGGAAAGCAGCCAGTCGATTACCCACCCTGGTGCGAGGCCGTTAGAAAACCAGATTCCTGCACAGTTGCTGTGGTGATGAAGGCCAACCATAAACTTCCCTGTCTATTTGGGGGGAAGAACCGCTTGCGAGCGGGAGAAGGACCGCTGTGGAAATCAGAGAACGACCCTCTCTACTAGACTGCAATACTGACAGGGATAGTTCACCCAAAAAATGAATTATGAATTTCTTTCTTTTGCTGAACACAAAAGAAGATATTTGGAAGAATATTGACAACCAAACAGCTGATGTGCCCCACTGACTTCCATAATATGGAGGGGGGAAAAAATATGGAAATCAATGGGGCACATCAACTGTTTGGTTACCAATATTCTTTCAAATATCTTTTGCATTAAGCAGAAAAAAGAAATTCATACAGGTTTGGAATAACTTGAGGGTGAGTAAATGAAGACAGAATTTACATTTTTGCGTGAACTATCCCTTGAATTCACAAATGCAAAACATTATTTATATATCACACACACATACATCAGGTTAGCCCATATAGAAAATGTTTTTCATATATTTTAAAATGTAATTTATTACATTTTATTTATTTTCCTGTGATGGCAAGGCTGAATTTTCAGCAGTCACTACTCCAGTCTTCAGTGTCACATGACCCTTCCGAAATCATTCTAATATGCTGATTTGGTGCTCAAGAAGCATTCCTTATTATGTGTTTAAACTATATGCACTGCTTTATTTATATGGATAACATGATACTCTATTTTTCATGATTCTTTAATGATTTGCATGATCAAAAGAACAATTTATTTGAAAATTTTCTGACTTAAACATTTGAACAGTACTGTAATAACAGTTTAATTGTTATTTGAAACAATTAAA

Function

NR:

description
hypothetical protein Si:ch1073-70f20.1, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000321_03319309_03319938.mRNA True 2484 mRNA 0.34 3 3318603 3321335

Neighbor

gene id symbol gene type direction distance location
CI01000321_03196013_03203541 NA coding downstream 114915 3195950 ~ 3203688 (-)
CI01000321_03067511_03106086 GRB10B, GRB10, GRB10A coding downstream 212517 3066740 ~ 3106086 (-)
CI01000321_03044953_03048124 NA coding downstream 270479 3044880 ~ 3048203 (-)
CI01000321_03028470_03033496 NA coding downstream 283712 3028397 ~ 3034891 (-)
CI01000321_02739755_02767802 NUDCD1 coding downstream 550635 2739482 ~ 2767968 (-)
CI01000321_03334483_03334797 NA coding upstream 12783 3334118 ~ 3334797 (-)
CI01000321_03386687_03389140 NA coding upstream 64710 3386045 ~ 3389140 (-)
CI01000321_03389183_03396898 NA coding upstream 67848 3389183 ~ 3396898 (-)
CI01000321_03401671_03403757 APOE coding upstream 80181 3401516 ~ 3403802 (-)
CI01000321_03410703_03411704 APOA4A coding upstream 89245 3410580 ~ 3413703 (-)
G458870 NA non-coding downstream 85927 3232474 ~ 3232676 (-)
G458841 NA non-coding downstream 134307 3184071 ~ 3184296 (-)
G458840 NA non-coding downstream 134676 3183660 ~ 3183927 (-)
G458838 NA non-coding downstream 148659 3169703 ~ 3169944 (-)
G458833 NA non-coding downstream 160418 3156204 ~ 3158185 (-)
G458888 NA non-coding upstream 18906 3340241 ~ 3340536 (-)
G458891 NA non-coding upstream 22095 3343430 ~ 3343708 (-)
G458901 NA non-coding upstream 136492 3457827 ~ 3458328 (-)
G458902 NA non-coding upstream 142136 3463471 ~ 3463686 (-)
G458903 NA non-coding upstream 144240 3465575 ~ 3465864 (-)
G458802 NA other downstream 226676 3088115 ~ 3091927 (-)
CI01000321_02282824_02284376 MBPA other downstream 1034092 2282238 ~ 2284934 (-)
CI01000321_01451689_01453423 NPY other downstream 1865296 1451194 ~ 1453530 (-)
G458122 NA other downstream 2282455 1032063 ~ 1036148 (-)
G458859 NA other upstream 150546 3471881 ~ 3489534 (-)
G458957 NA other upstream 340291 3661626 ~ 3666999 (-)
CI01000321_03737149_03737996 TMEM238A other upstream 415121 3736456 ~ 3738096 (-)
G459011 NA other upstream 488792 3810127 ~ 3816395 (-)
G459803 NA other upstream 1697631 5018966 ~ 5025886 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013917 si:ch1073-70f20.1 coding NC_007130.7 CM002903.2 10979983 ~ 10986661 (+)