CI01000321_03561216_03562202


Basic Information

Item Value
gene id CI01000321_03561216_03562202
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 3558614 ~ 3562292 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000321_03561216_03562202.mRNA
CCATATGTGGCAGTAATGACAACTTCCTGTGTTCTCACTAACTGTTCCCAGGGTTGCCAAGTGACATTGTTTGATGAGCCTCAGTGTTGCAGATTATGTTCCGAATTGATTAAATTTCCGCTGTTTTGAGACATCGCACCCATCACGTAGTCTAATTATGCATTCAGAATGTCTAAGACAGAGGTGAAGGGAGCTCGCAGACACTTTGTGTGATACTGGAGAGACACAAAATGCTGAAGATCCTAATTTTCCTACATTGTAAAGGTGAGTAATTTTGTTTATTAGACATGTTTATTTATGAACAGAGAATATTTCTTCAACTTCAGGCACATAGGGAATGTTGCAAGGAGTGATTTTTATTAAAACTAACAAATATAAACTTTTTTTGTTATATGAAGATCAAATTGAAACTAAAGTGGAAACTTTTCCATTTCTTTTATAATTTTTGCCTTTTATTTTTATGTATTATTTCACACAAAAGCCAGACTTTAAAATGTAAAATATGAAAATCAATAATGCTTAAATCAATAATCAATAAAACAATTTTGAATTTTATTGTATAAAAATTATTTATTTAAATATTTCATACTTTCCTACATTCATTTCCACAACACAGTAGAATTTTGCCCCAATAAAGTTAGTAGGACTTGTTGCCAAGGAGGCAATGTGAAGAGCATTAGTAATATTAAGAAAACAAAGTAAAATCAGTGTAAATGTCATTATTATTTTGTGGCATTTACAGTTAAGCTATGTGTGTAAATATGTTTTAATTATGATGCAAAAATGCTATGAAAATGACCCTTTGCAAGACAAAGGATTCAATCATTTTATTACAAAAATGTAATTTCCACTACTGTCATTTCCATCAGAATACTATTGAATACAATTCATACTTTTAAATTTAGTGGAAATGAAACTGTGGTGTTAATTTTCATGACTTTGTTAGAAAGTGTAATACACACACACACACACACACACACACACACACACACACACACACACACACACAATTAATTTAGTAAGAGTAGGAGTTTTTAAAGGATTAGTTCACTTTCAAATGAAAATTACCCCAAGCTTTACTCACCCTCAAGCCATCCTAGGTGTATATGATTTTCTTCTTTCTGATGAACACAATCGGAGAAATATTATTAAATATCCTGACGAATCCGAGCTTTATAATGTCAGTAAGCGGTTAATAAAGGCCTTCTGAAGCGAAGCGATGCATTTGTGTGAAAAAAAAATATCCATATTTAACAAATTATGAAGTAAAATATCTAGCTTTCACCAGACTTCTTTTCCGTATTCAAGTTACGAAGAAAGTGTAAACTGGTGTCGCGTCGGTTACACTTTTTCCGTAAGTTGAATAGAGAAGGCGTAGGACGTAGCGTGAAGGCCTGTACACACCGGGACGAATATCGCGTGCGATTATCGCCTCGTGACTAAACAAAGGGCGCCAATGTGAATGTGCGAAAAACGGCAGGCGTAAAAGCGTCATTTTTTAAAAAACGCCTCGGGTTCGTTTTTTTTGGTTTGACGCGCCGCGTTAAAAACTGGCTGACCAATGAGATTGCCGCTTTTGTTCACGTGCGTGGAGCTGCTGAAGTTACAGTAAAACACGACTTGGTGGCGCTCAAACACAAAACGGTCTTGCCGAGCACACATTGATACCAGGACGACGAAGAGGAAGTAAGTAGACGAGGAAGACCCCTACAAACTATCCCTGCGTCTCAATCAGCTCTCTAGCTTCCTAGGTCGTGTATCAGTATACCGTGTAAATGAATGTGGCCGACTCCCTGATCAGTGCCCTGACTACTGAACTAATTGAGATGCACGCTATGGGTGTTCTGCCAGTTCTTGGCCACACCAATAGATGTGTATTATTTCTTTATTTTTACTGTTCGTTTTTTTCTTTTACATTCAAAAAAATATAGTTGAGAATGTCTATTTCATAAATATGTTTATTTGCACTACCGTTCACTTGCACTACTGTCATTGTGACTTATTTGCATTACCATTTCTGACTACCATCTCTCATATGTCATGTATATGCCATATATGACATTTTATATCTGTATTTTTGTCTTCTTTAACTTTATTAATATCATAAATATGTTTATTCGCACTACCGTTCAGCACAAGCGCCATATACTGTCAGGGAGTGAATTTGCACGTTCACTCTGCGCATCGCCAGTAAAAATCACTTGGGTATGAACACAAAAAACGTCTCGAAAAACACTGGCGATAAGCGCGTGCGATATTCGTCCCGGTGTGTACAGGCCTTAAGGTTTTTGAACTGCTAGAGTTTTACACTTTCTTCGTAACTTAAATATGGAAAGCGTTCTGACAGAAGCTAGATATTTTACTTCATAACTTGTCAAATATGGATTTTTTTTTTACACAAACGCATCGCTTCACTTTAGAAGGCCTTTATTAACCCCCTGGAGCCGTGTAGAATATGTTTATGATGGGTGGATGTGGATGAGAGTTGAGAGTTAATTTTTCAGTTTGTCCGTTATAATTCTTTGTACCTTATTGACTTCTACCGTTTTGTTCTCTGCACAGTGTTTCTACCACCTGTTGACCATCTGTGAGGTACAGTCTAATGGCCAAGTTGGTCTACCAGATTCTCTTGGTATTCTACATCCTCACCTTCTTGATCGGCCTTCCTGCCAACATCCTAGCATTCTTTACCTTCTGTCGAAAAGTTTACCACAAACCCACCCCTATTGACATTCTCTTGCTAAACCTGACAATATCTGACCTCATCTTCCTCGCAGTCCTGCCATTTAAGATGAAGGAGACCATTGACAGTTTCAACTGGAGCCTTCCCTATTACCTGTGCTCCATTAGCAGTTTTCTTTTCTTCTCCACTATCTACACCAGCACACTATTTCTGACTGCGATAAGCATAGAACGCTATCTAGGTGTTGCGTTTCCGATCCGATACGCTTTAGGCCGCCGACCACGCAACGCTGTGATTGCAAGCTGCTTCCTCTGGCTTCTAGGATCTCTCAACCTCAGCATCGTGTACATTGTGCCATACATAAACTCAACTGACAACTCAAGCAACAGCAAGCTACAGCCCAATCCCCACGTGAGAATTTGCTATGATAATTTCACCATAGAGCAACTGAACATTCTACTTCCGGTTCGTCTGGAGCTTTTTCTCGTGCTTTTCTGTATACCCTTCCTCATCTGCTGCTTTTGCTACATAAACTTCATTCGAATTCTCTCCAATCTGCCCCATCTCGGAAGACGTCGTAGACTCAGGGCTATTGGGCTTGCGGTTGGGACGCTGTTGGTTTTCACCATCTCTTTCAGCCCCTATAACGTCTCACACGTGGTTGGTTTCATCCACGAAAATAGCGAGGAGTGGCGTCACTTGGCTTTAATCACTAGCACTCTAAATGCCTGTTTGGACCCCATCATCTTTTACTTTTCCTCGGCTGCCGTTCGCAGTGCGATACGAACATGTGTTAATGGTCTAAAAGAGAAAATGCACATTGTAACATACAGAAGATGCTGTCCTGCTGGCCCTTCCAAATCTGAGGCCTACAAGGAGACAAACCCACCCGTTGACCTGGGGTGAGCACCGAGCCACAGAGAGTATTTTATTTCATTTAGGCCTTTAGAAAGTGTTGTGTGCATGTACTGTGAAGTTTATGTTATGAAAGGTAAA

Function

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000321_03561216_03562202.mRNA True 3679 mRNA 0.39 1 3558614 3562292

Neighbor

gene id symbol gene type direction distance location
CI01000321_03550354_03554714 NA coding upstream 3312 3550022 ~ 3555302 (+)
CI01000321_03532268_03545406 TEKT2 coding upstream 11055 3531993 ~ 3547559 (+)
CI01000321_03490261_03505373 SLC9A3.1 coding upstream 53141 3489087 ~ 3505473 (+)
CI01000321_03472129_03487677 SLC9A3.2 coding upstream 70667 3471240 ~ 3487947 (+)
CI01000321_03375884_03385622 PSMD4, PSMD4A, PSMD4.L coding upstream 172760 3373433 ~ 3385854 (+)
CI01000321_03597314_03599713 LIM2, LIM2.4, MGC84384, LIM2.L, LIM2.5 coding downstream 34054 3596346 ~ 3599962 (+)
CI01000321_03650761_03655489 NA coding downstream 87074 3649366 ~ 3655509 (+)
CI01000321_03674424_03676748 NA coding downstream 112132 3674424 ~ 3677004 (+)
CI01000321_03680978_03683234 SBK2 coding downstream 118686 3680978 ~ 3683679 (+)
CI01000321_03702229_03709660 NA coding downstream 139796 3702088 ~ 3709808 (+)
G457780 NA non-coding upstream 110355 3384433 ~ 3448259 (+)
G457732 NA non-coding upstream 135236 3415248 ~ 3423378 (+)
G457726 NA non-coding upstream 154717 3401430 ~ 3403897 (+)
CI01000321_03351289_03352346 NA non-coding upstream 205937 3350984 ~ 3352677 (+)
G457775 NA non-coding upstream 217870 3340520 ~ 3340744 (+)
G457842 NA non-coding downstream 69485 3631777 ~ 3635480 (+)
G457859 NA non-coding downstream 130589 3692881 ~ 3696205 (+)
G457872 NA non-coding downstream 160457 3722749 ~ 3732110 (+)
G457874 NA non-coding downstream 174154 3736446 ~ 3738593 (+)
CI01000321_03795430_03804685 SHISA7B, SHISA7 non-coding downstream 240714 3792915 ~ 3805511 (+)
CI01000321_00815160_00819665 NA other upstream 2735767 815160 ~ 819749 (+)
G456774 NA other upstream 3131589 426083 ~ 427025 (+)
CI01000321_04013470_04014515 CACNG8 other downstream 444334 4013468 ~ 4015412 (+)
G459303 NA other downstream 923105 4485397 ~ 4488552 (+)
CI01000321_04515562_04517953 MRPS21 other downstream 953242 4515534 ~ 4518187 (+)
CI01000321_04748037_04748315 DPM3 other downstream 1185120 4747650 ~ 4749579 (+)

Expression


Co-expression Network