CI01000321_03680978_03683234 (SBK2)


Basic Information

Item Value
gene id CI01000321_03680978_03683234
gene name SBK2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 3680978 ~ 3683679 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000321_03680978_03683234.mRNA
ACTGCCACAAGACTTTTGGATGAGCTGTGTCACTTAACGGTTCAGTCTCTAGAATCACTAGAACCCTTAGATCACTTCCAAGTTATTAAACTTCTTGGAGAGGGTTCATACGGCAAAGTTATGTTAGCGGTGCACAAGAAGAGAGGAACCCCAATGGCCCTTAAATTCTTTCTGCGAGAATCCACATCTCTCCTGTCCTTTCTGAGGGAATATAACCTGTCTTTGGCCTTCTGCACCCACCCTTCACTTACCTCAGCTTTGGGCATTGCTTTCTCCACTCCTACTCACTACGTGTTCGCCCAGCAACCTTGCCTCTACGGCGACCTCTATGATGTCATCGTTCCTGAGGTTGGTTTGGAAGAGAGCCGTGCCCAGGGAGTGGCTTCCCAGATCAGCGGTGCCCTCTCTCACCTCCATTCCCTTGGCTTTGTCCATCGAGATGTCAAACCGGAAAACATCTTCCTATGTGACCGTAACTGTCATTGGGTCAAGCTTGGTGATTTTGGCATGGTCAAGGCTGCAGGGACCAGGGTACCGTGCGTGTGGTACAGTTCCCCTTACTGCACACCTGAGGCTGAGATTGCAAGGAAGGGGGAGGAGATTGATTTGGGCCACTCAGAGGTGGATGACAATGGGAACAAGCCAAAAGGGGACTCTGGAAAGACTCGAAGGATGTTGGTGTCTGTGGATCCCAGTACAGACAGTTGGGCACTAGGCATTCTAATCTACGCCATGCTTATGGGGAGCCTTCCGTGGTCTGAGACTGTTTCAGACAACACTGCATATAAAAGCTATCTAAAGTGGAGCAATTGGGAAGGTTTGGCATTACAAGAGAGAGGGTCAGATCAACCTGAGGACTTCCACCAGGTGGCAACCCAGTTTGCTGCATTCACCCCTCTTGCAACATGTCTTCTCAAATCCCTGCTGCATCCACAGCCCAGGCTTCGTGGCAGGCCAGATGAAGTGGGAAGGTACCTGGGAGGAGCCTGGCTATCAGACAAGGATGTCAGTGGGTGATGCAACAAAGGAAAGACAGGACTGAGGTTGTTGTCATCTGGACTATTCACTCTATGGTGGCAAGAATGGCAATCACTTTTTAGAAGAGGTTCTGATGGTAATCTGTTGCCAGTTTTAAAATATAAGACTGTTGTTTAATACATTCTATATATTCATAATTATTTGGGAGTTTCTTTTCCTGACTGACCATTACAGATCTTAACTTTAAACACTTAAGGTTTTAGTATTAAGGTTGATTTAACTATTTAACTACAAATAAGGCATACAAAAAGCATTTTTTAAAACTTTGGCCTCCATCCACAGTCCAGCAACATTGCTACACTCCAAAACAATGTGCGTCCTCCAAAGATCAGTGTAAGGATACACCATGGAATCCTTACCAGGAATATTAAGTGACAGCTAAAGATCTGAAGCATCTTAATAACATCTGTGTTTATAAGTCTAA

Function

symbol description
sbk2 Predicted to enable MAP kinase kinase activity. Predicted to be involved in MAPK cascade and protein phosphorylation.

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000321_03680978_03683234.mRNA True 1462 mRNA 0.46 3 3680978 3683679

Neighbor

gene id symbol gene type direction distance location
CI01000321_03674424_03676748 NA coding upstream 3974 3674424 ~ 3677004 (+)
CI01000321_03650761_03655489 NA coding upstream 25469 3649366 ~ 3655509 (+)
CI01000321_03597314_03599713 LIM2, LIM2.4, MGC84384, LIM2.L, LIM2.5 coding upstream 81016 3596346 ~ 3599962 (+)
CI01000321_03561216_03562202 NA coding upstream 118686 3558614 ~ 3562292 (+)
CI01000321_03550354_03554714 NA coding upstream 125676 3550022 ~ 3555302 (+)
CI01000321_03702229_03709660 NA coding downstream 18409 3702088 ~ 3709808 (+)
CI01000321_03714795_03718845 NA coding downstream 30797 3714476 ~ 3719085 (+)
CI01000321_03739229_03740955 NA coding downstream 55550 3739229 ~ 3740990 (+)
CI01000321_03749658_03759359 U2AF2.S, U2AF2, U2AF2A, U2AF2B coding downstream 65979 3749658 ~ 3759645 (+)
CI01000321_03767896_03783640 CNOT3, CNOT3B coding downstream 84217 3767896 ~ 3783926 (+)
G457842 NA non-coding upstream 45498 3631777 ~ 3635480 (+)
G457797 NA non-coding upstream 108851 3507969 ~ 3572127 (+)
G457780 NA non-coding upstream 232719 3384433 ~ 3448259 (+)
G457859 NA non-coding downstream 9202 3692881 ~ 3696205 (+)
G457872 NA non-coding downstream 39070 3722749 ~ 3732110 (+)
G457874 NA non-coding downstream 52767 3736446 ~ 3738593 (+)
CI01000321_03795430_03804685 SHISA7B, SHISA7 non-coding downstream 119327 3792915 ~ 3805511 (+)
G457878 NA non-coding downstream 154628 3838307 ~ 3838532 (+)
CI01000321_00815160_00819665 NA other upstream 2858131 815160 ~ 819749 (+)
G456774 NA other upstream 3253953 426083 ~ 427025 (+)
CI01000321_04013470_04014515 CACNG8 other downstream 322947 4013468 ~ 4015412 (+)
G459303 NA other downstream 801718 4485397 ~ 4488552 (+)
CI01000321_04515562_04517953 MRPS21 other downstream 831855 4515534 ~ 4518187 (+)
CI01000321_04748037_04748315 DPM3 other downstream 1063733 4747650 ~ 4749579 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014590 si:ch211-171h4.3 coding NC_007130.7 CM002903.2 10415484 ~ 10425140 (-)