CI01000321_03702229_03709660


Basic Information

Item Value
gene id CI01000321_03702229_03709660
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 3702088 ~ 3709808 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000321_03702229_03709660.mRNA
ATATAAAAGAAGCCATTTTGATCCATGTACTGTATTTGCAATGATTAACAATGATCAGCCTATTAAGATCATATTTGTTGTACAATATGTATTTTACATTTTTTTAAAAATCTTAAAAAGGTCTAGGACAAAACCACCATCATGACCCACTCAATGCTGCGACGCCAACTGAAGAACCTTGTTCAGAACTTCTCTGAGGCAGAGGTCAAGGTTCGGGAAGCGACCTCTAATGACCCCTGGGGGCCATCGAGCTCCCAGATGGCCGACATCTCAGACCTGACCTACAATGTTGTGGCATGTAACGAGATTTTGGCCATGCTCTGGAAGCGCCTCAATGATGACAAGAATTGGAGGCACGTGTACAAGCAGTGTGTGGAGAACATTCACATTATCAAAATCCTAATAGAATACCGCTTCACAGACAAGGATGGAAAGGACCAGGGGGTGAATGTGAGAGAAAAGGCTAAGATAGTGATGGTGCTGATTGAGGATGAGGACAAAAGGAAAGAGGAGAGAGATTTTGCAATGAAGACAAAAGACAAGTTGGCAAAGGCTCCCAATGCGTCCTCTGCTACAGGACCAGAAAAAGAAAAGCCAGAGATCCCCCCGTATACAGGGCTGCCCTCCCTGGACAACATCCCATCAGTGGCTGACCTGACCGCCGCCATGGCCAAGAAGAAAGAGGAGCAGAAACGTCTGGAGGCCGAGAGGAAAGAGGCAGAGAGAAGGGCAAAGGAAGGTGACACAGAGCCAGATCTTTGGGAAAAAGCAGCAACAGCAGCACCTCCGTCCAGCTCGGACCCCTGGGGAGCCCCATCCGACGCATCCAACGAATCCGCCCCTGCTACCAACGACCCATGGGGGGCATCATCTGATGACGCAAAGAAATCCAGTCCAACTACCAATGATCCTTGGGGTGGATCTTCTGATGGGAAAAATGGATCTGCACCCACATCCAATGATCCATGGGGAGGATCTGCCAGTGACGAGAATGGTTCTCCACCTGCCTCCAGTGATCCTTGGGGAGGATCTACGAATGTTGAGAAAAGTTCTCCACCTGTTGCCAGCGACCCATGGGGCAACTCTGTTGGACTTTCAGAGGATAAAGCCCCGTCAACAAACGATCCATGGGGGGAAACGGTGAAAGACTCGTCAGTGACGTCAGATCCTTGGGGGGCACCGGCGGATAATGTACAGGATTCAGCACCTGCAAACTCTGACCCCTGGGGGGCATCACCAGCCACGTCTGATCCATTTGGTGATGGTTCAAATGCAGCTAATGACCCTTGGGGCACAGCAGTGTCTTCACCCCCCACTGCGAATGACCCCTGGGGTGCCCCATCAGCTCCAACTAATGCTATGACGACTGGTGACCCTTTCGGTGATGGAGGTAGTTCAGATCCCTGGGGAGGTTCTTCTGAGAATGGTGACACTGCTACAAAACCTGCTGATGAGACCAAAAAGCCAGCGTCCTTCCTGGGAGCAGGTGCTTCATTGGTGGACTTGGACTCTCTTATGTCAGTCAAGCCCAAACCGAAACAGCCCCCTCTCAGCGCCATCTCCACTCAAAAAGCCCCGGGTGTTTTGCAAGCCACAGGTATTATCAGGCCATTGGGGGGCAGCATATCCAATGCAGGCGGTTCTGTTGCACAGCCTTCAAACTCAAATTATTTTGGTTTTAGTGCCATGACACCCTGTTCCAGTCGCCTCTCCCCTCTAAACACAGCCTTCGGAGTACCTGCCGCCCATATGGCATCTCCAACCCAGAATGCAAGCCTTTCAGCTTTGACGATGCCCAACATGGGTTTTTCTATGGCTAACCCTCACACGGCAACTAGAATGGTACAACCCAACAACCCTCTTATTGGTGAGTTATGTCCTGTGTCTCTCACAGGAACCGTTACCCCACAAGCTCCAGTTCTTCATCGACCTCCATTGGTTTGGGGCACTGGAACTGGGGCAGCTGGGAAAGGAAATAACATTTTTTGAGTTCTCCATCCGGCATCCATTCATCCCTAGCCCTCTCCTTCCCCCACCCTTTTCCATGATCCTAGTTGATTATGTGTGTGTATATAAGTGTGTGCAAATATTTAAATATTAATGAGCAACAATATACCGTAAGTCTTCTGTTTTGGGA

Function

GO:

id name namespace
GO:0003674 molecular_function molecular_function

KEGG:

id description
K12471 EPN; epsin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000321_03702229_03709660.mRNA True 2137 mRNA 0.50 9 3702088 3709808

Neighbor

gene id symbol gene type direction distance location
CI01000321_03680978_03683234 SBK2 coding upstream 18409 3680978 ~ 3683679 (+)
CI01000321_03674424_03676748 NA coding upstream 25084 3674424 ~ 3677004 (+)
CI01000321_03650761_03655489 NA coding upstream 46579 3649366 ~ 3655509 (+)
CI01000321_03597314_03599713 LIM2, LIM2.4, MGC84384, LIM2.L, LIM2.5 coding upstream 102126 3596346 ~ 3599962 (+)
CI01000321_03561216_03562202 NA coding upstream 139796 3558614 ~ 3562292 (+)
CI01000321_03714795_03718845 NA coding downstream 4668 3714476 ~ 3719085 (+)
CI01000321_03739229_03740955 NA coding downstream 29421 3739229 ~ 3740990 (+)
CI01000321_03749658_03759359 U2AF2.S, U2AF2, U2AF2A, U2AF2B coding downstream 39850 3749658 ~ 3759645 (+)
CI01000321_03767896_03783640 CNOT3, CNOT3B coding downstream 58088 3767896 ~ 3783926 (+)
CI01000321_03795430_03804685 SHISA7B, SHISA7 coding downstream 85493 3792915 ~ 3805511 (+)
G457859 NA non-coding upstream 5883 3692881 ~ 3696205 (+)
G457842 NA non-coding upstream 66608 3631777 ~ 3635480 (+)
G457797 NA non-coding upstream 129961 3507969 ~ 3572127 (+)
G457780 NA non-coding upstream 253829 3384433 ~ 3448259 (+)
G457872 NA non-coding downstream 12941 3722749 ~ 3732110 (+)
G457874 NA non-coding downstream 26638 3736446 ~ 3738593 (+)
G457878 NA non-coding downstream 128499 3838307 ~ 3838532 (+)
G459126 NA non-coding downstream 389213 4099021 ~ 4102339 (+)
CI01000321_00815160_00819665 NA other upstream 2879241 815160 ~ 819749 (+)
G456774 NA other upstream 3275063 426083 ~ 427025 (+)
CI01000321_04013470_04014515 CACNG8 other downstream 296818 4013468 ~ 4015412 (+)
G459303 NA other downstream 775589 4485397 ~ 4488552 (+)
CI01000321_04515562_04517953 MRPS21 other downstream 805726 4515534 ~ 4518187 (+)
CI01000321_04748037_04748315 DPM3 other downstream 1037604 4747650 ~ 4749579 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014589 zgc:194578 coding NC_007130.7 CM002903.2 10375782 ~ 10395683 (-)