CI01000321_03737149_03737996 (TMEM238A)


Basic Information

Item Value
gene id CI01000321_03737149_03737996
gene name TMEM238A
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 3736456 ~ 3738096 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000321_03737149_03737996.mRNA
AGGAAGTCCTTGTTTCTTTTTGTTTGATTTCTGATGTGATGACAGCGTAATAACTGTTTTAAGTTTGAAAGGGCCGATTCCGGTGGTGTCAAATATCAACATGCCTGGGAGGGTCCGGAAGCAGCTTCAAACAGTTACCATGGCATGTGCTGGTCTCAAACACTGCAAAGTGGCCCTGGGCTTTGCTGTTATTTTCGACATTTTTGGCTTTGCGGCCCTGTTTGTGGGGCTTTTTGTGCCACTGGAAACGAAGGGGAGAGATTTCGGGGACCTTCTTGTCTACACTGGGGCCGTCTTAGTACTGATATCACTTGGCGGTTGGGTCATGTGGTATAGTGGCAACATTGAGGGTATTCCAAAACAAAAGGATCTGAGCGGAATTGGCAATGCCGTGGAACGTTTGGCCCGCAACCTCAGCAGGAAAATATATAGTACACATCGTGTTCACAGAGGACCCTGACTTTTGACGTTTTATTTCTCATTTCTATTTTTTTATATATAAAAAGACTCCCTTAAAAGAAGATTTTTGTGCCTTACAGATTTGGACATTGAGATTCAAAGAAAAAATTTATTTGTCGAACTGAATATCCTGACCTTACACCCTGCTTAGGTAAATAGCTGTTGTACTTAAATAACATTTGGCCTATATTGTACTTTTTATCTAAATATGTTTTAATGTAATAGGCTACTATTGTAGTTTATTCAGTTACTATAGCCTACAACAAAGGTCAGAAAGAACGTTACTACACGAATTGTTACAAGAAATTAAACTGTACTAGTGTTAACATGTATGCAACATTTTTAACATTTATTTTCTGTTTTAGCAATTCATGGCCAAAAGCAGTGTTTATTCTCTATAAAGTGTGTTTTAGTTATATTTTTAGTTATCAAAAAATGGATTCATTTTTAGCAAATTGTCAGTATTGTTTGTCTGTTAAATGAACATTTTCAAGTGGCCTATTTGTATTTAGACCGCAAATCGTGACCCACCAATCAGAGTACAATAATTTGCAGTACTTCATGTGATCTCTAGGTGGAGACAAACATGAACATTTCATGTTATGGCAAGAGTTGATAGCGGTCACGTGGCTTTTGTATGAATAAA
>TU526872
GGTCCGGAAGCAGCTTCAAACAGTTACCATGGCATGTGCTGGTCTCAAACACTGCAAAGTGGCCCTGGGCTTTGCTGTTATTTTCGACATTTTTGGCTTTGCGGCCCTGTTTGTGGGGCTTTTTGTGCCACTGGAAACGAAGGGGAGAGATTTCGGGGACCTTCTTGTCTACACTGGGGCCGTCTTAGTACTGATATCACTTGGCGGTTGGGTCATGTGGTATAGTGGCAACATTGAGGGTATTCCAAAACAAAAGGATCTGAGCGGAATTGGCAATGCCGTGGAACGTTTGGCCCGCAACCTCAGCAGGAAAATATATAGTACACATCGTGTTCACAGAGGACCCTGACTTTTGACGTTTTATTTCTCATTTCTATTTTTTTATATATAAAAAGACTCCCTTAAAAGAAGATTTTTGTGCCTTACAGATTTGGACATTGAGATTCAAAGAAAAAATTTATTTGTCGAACTGAATATCCTGACCTTACACCCTGCTTAGGTAAATAGCTGTTGTACTTAAATAACATTTGGCCTATATTGTACTTTTTATCTAAATATGTTTTAATGTAATAGGCTACTATTGTAGTTTATTCAGTTACTATAGCCTACAACAAAGGTCAGAAAGAACGTTACTACACGAATTGTTACAAGAAATTAAACTGTACTAGTGTTAACATGTATGCAACATTTTTAACATTTATTTTCTGTTTTAGCAATTCATGGCCAAAAGCAGTGTTTATTCTCTATAAAGTGTGTTTTAGTTATATTTTTAGTTATCAAAAAATGGATTCATTTTTAGCAAATTGTCAGTATTGTTTGTCTGTTAAATGAACATTTTCAAGTGGCCTATTTGTATTTAGACCGCAAATCGTGACCCACCAATCAGAGTACAATAATTTGCAGTACTTCATGTGATCTCTAGGTGGAGACAAACATGAACATTTCATGTTATGGCAAGAGTTGATAGCGGTCACGTGGCTTTTGTATGAATAAAAATTGTTTTGACCATTTTTGACTAATTAAAAATTAGTCAAAATTTTTT

Function

symbol description
tmem238a Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM238 (transmembrane protein 238).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000321_03737149_03737996.mRNA False 1105 mRNA 0.38 2 3736504 3738096
TU526872 True 1042 TUCP 0.36 2 3736456 3737985

Neighbor

gene id symbol gene type direction distance location
CI01000321_03722066_03729777 RCVRN3 coding downstream 5004 3722008 ~ 3731500 (-)
CI01000321_03693751_03699051 NECP1, NECAP1 coding downstream 37453 3693751 ~ 3699051 (-)
CI01000321_03634967_03638070 NA coding downstream 91464 3632865 ~ 3645040 (-)
CI01000321_03617970_03623187 NA coding downstream 112765 3617822 ~ 3623739 (-)
CI01000321_03603359_03605516 NA coding downstream 130914 3603302 ~ 3605590 (-)
CI01000321_03786243_03791623 NA coding upstream 47438 3785534 ~ 3791943 (-)
CI01000321_03793750_03794395 NA coding upstream 54699 3792795 ~ 3794990 (-)
CI01000321_04040511_04043535 CACNG6A coding upstream 301589 4039685 ~ 4045319 (-)
CI01000321_04099497_04107042 NA coding upstream 360518 4098614 ~ 4107042 (-)
CI01000321_04144965_04154259 FAM131BA coding upstream 406786 4144882 ~ 4154259 (-)
G458984 NA non-coding downstream 35445 3700781 ~ 3701059 (-)
G458958 NA non-coding downstream 49789 3682577 ~ 3686715 (-)
G458954 NA non-coding downstream 57878 3672445 ~ 3678626 (-)
G458980 NA non-coding downstream 66083 3670197 ~ 3670421 (-)
G459009 NA non-coding upstream 58212 3796308 ~ 3797461 (-)
G459065 NA non-coding upstream 180745 3918841 ~ 3919154 (-)
G459057 NA non-coding upstream 236089 3974185 ~ 3992851 (-)
G459375 NA non-coding upstream 296141 4034237 ~ 4034460 (-)
G459380 NA non-coding upstream 309618 4047714 ~ 4047935 (-)
G458957 NA other downstream 69505 3661626 ~ 3666999 (-)
G458859 NA other downstream 246970 3471881 ~ 3489534 (-)
G458802 NA other downstream 644577 3088115 ~ 3091927 (-)
CI01000321_03044953_03048124 NA other downstream 688301 3044880 ~ 3048203 (-)
CI01000321_02282824_02284376 MBPA other downstream 1451993 2282238 ~ 2284934 (-)
G459011 NA other upstream 72031 3810127 ~ 3816395 (-)
G459803 NA other upstream 1280870 5018966 ~ 5025886 (-)

Expression


Co-expression Network