CI01000321_03739229_03740955


Basic Information

Item Value
gene id CI01000321_03739229_03740955
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 3739229 ~ 3740990 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000321_03739229_03740955.mRNA
ATGACTGATGCACAGGGAAGCACGGGGAGCTACAGAGGTTTGAAGAACGAGGATGGGTATGAAATCTCCATTCCTCTTGAGGACAACAACCTGGACGAATCTGGTTTCTATAATCAAACTGACCACACCTTCAATGAGTCAGCCTCAGGTCAGATTCCTCCTTGCAGTTCGTACCTTCTGATTACCAGCCTCCGAGCACAACTGCAGATTTCTCTGGAAAAGAACTCCTGGCTCCAAAAACGCATTGAAGATCTGGAGGAGGAGAGGGACTTCCTGCGCTGCCAACTTGACAGATTCATTTTCACCACCAAGAGTCAAGAGAGCAATGGCACAATGGGAAAAGAAACTGAAGCAGATGCCGTGCAGCAACCTACCAGTCAGAAGCAGCCCAACAATCCAAAGCCCCCCACCCGGAAAACACCCACTCCTTCATCACACATGATGACACGCTCTGGAAAAATCCCTGCACGCAACCAAAAGCGCAGCAGAAAAAACAGCTAATTAGCTTCTACTTTTTTTTTTTTTTTTCTCTTTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000321_03739229_03740955.mRNA True 536 mRNA 0.47 4 3739229 3740990

Neighbor

gene id symbol gene type direction distance location
CI01000321_03714795_03718845 NA coding upstream 20144 3714476 ~ 3719085 (+)
CI01000321_03702229_03709660 NA coding upstream 29421 3702088 ~ 3709808 (+)
CI01000321_03680978_03683234 SBK2 coding upstream 55550 3680978 ~ 3683679 (+)
CI01000321_03674424_03676748 NA coding upstream 62225 3674424 ~ 3677004 (+)
CI01000321_03650761_03655489 NA coding upstream 83720 3649366 ~ 3655509 (+)
CI01000321_03749658_03759359 U2AF2.S, U2AF2, U2AF2A, U2AF2B coding downstream 8668 3749658 ~ 3759645 (+)
CI01000321_03767896_03783640 CNOT3, CNOT3B coding downstream 26906 3767896 ~ 3783926 (+)
CI01000321_03795430_03804685 SHISA7B, SHISA7 coding downstream 54311 3792915 ~ 3805511 (+)
CI01000321_03811184_03815473 ZNF865 coding downstream 69305 3810295 ~ 3815631 (+)
CI01000321_03820289_03828024 DBP, DBPA coding downstream 79134 3820124 ~ 3828772 (+)
G457874 NA non-coding upstream 636 3736446 ~ 3738593 (+)
G457872 NA non-coding upstream 7119 3722749 ~ 3732110 (+)
G457859 NA non-coding upstream 43024 3692881 ~ 3696205 (+)
G457842 NA non-coding upstream 103749 3631777 ~ 3635480 (+)
G457797 NA non-coding upstream 167102 3507969 ~ 3572127 (+)
G457878 NA non-coding downstream 97317 3838307 ~ 3838532 (+)
G459126 NA non-coding downstream 358031 4099021 ~ 4102339 (+)
G459178 NA non-coding downstream 495514 4236504 ~ 4236726 (+)
G459180 NA non-coding downstream 507616 4248606 ~ 4248923 (+)
CI01000321_00815160_00819665 NA other upstream 2916382 815160 ~ 819749 (+)
G456774 NA other upstream 3312204 426083 ~ 427025 (+)
CI01000321_04013470_04014515 CACNG8 other downstream 265636 4013468 ~ 4015412 (+)
G459303 NA other downstream 744407 4485397 ~ 4488552 (+)
CI01000321_04515562_04517953 MRPS21 other downstream 774544 4515534 ~ 4518187 (+)
CI01000321_04748037_04748315 DPM3 other downstream 1006422 4747650 ~ 4749579 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014587 ccdc106b coding NC_007130.7 CM002903.2 10325360 ~ 10330831 (-)