CI01000321_03749658_03759359 (U2AF2.S, U2AF2, U2AF2A, U2AF2B)


Basic Information

Item Value
gene id CI01000321_03749658_03759359
gene name U2AF2.S, U2AF2, U2AF2A, U2AF2B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 3749658 ~ 3759645 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000321_03749658_03759359.mRNA
AGCGGGACAAAGAGAACCGGCACCGACGACGCAGCCCTTCACGCAGCCGTAGTCGAGAGAGGAAGAGGAGGAGCAGAGAGAGGAGAAGCAGGGAACGCCGCAGTGACAGCAAGGACCGCCGCCACAGACGCAGCCGTTCACCTCAACGGGAGAAAAAGAAGAAAATTAAGAAGTACTGGGATGTACCGCCTCCTGGCTTTGAGCATATTACACCCATGCAGTACAAGGCAATGCAAGCTGCTGGTCAGATCCCTGCTACCGCTTTGCTGCCCACCATGACGCCAGACGGCCTGGCAGTAACGCCGACCCCGGTACCCGTAGTGGGCAGTCAGATGACTCGCCAGGCTCGCAGACTTTACGTTGGCAACATCCCATTTGGCATCACAGAGGAATCCATGATGGACTTCTTCAATGCCCAGATGAGACTTGGCGGTCTGACTCAGGCCCCTGGAAACCCTGTCCTCGCCGTCCAGATTAACCAGGATAAGAACTTTGCTTTCCTTGAGTTCCGATCAGTGGATGAGACCACGCAGGCCATGGCATTTGATGGCATCATCTTCCAGGGGCAGAGTTTAAAGATTCGCCGGCCGCACGACTATCAGCCATTACCTGGCATGAGCGAGAACCCCAGCGTATATGTGCCTGGTGTGGTGTCCACTGTTGTACCAGACTCTATTCACAAGCTTTTCATTGGAGGTTTGCCAAACTATCTCAACGACGACCAGGACAGATTGTTTGAAAACCAGGTTAAAGAGTTGTTAACCTCTTTTGGACCTCTCAAAGCCTTCAATTTGGTTAAGGACAGCGCTACCGGCCTCTCTAAGGGCTATGCTTTCTGTGAATATGTGGATGTTAACATCAATGATCAGGCTATTGCAGGATTGAATGGTATGCAGTTAGCAGATAAGAAGCTGCTGGTTCAGAGGGCAAGTGTAGGGGCCAAGAATGCCACAATGACGAGTATAAACGAGACTCCGGTCACGTTGCAAGTACCAGGGCTGATGACAAACTCCATGATGCAGATGGGCGGTATCCCTACCGAGGTCCTGTGCCTGATGAACATGGTGGCTCCAGAGGAGCTCCTGGACGACGAGGAGTACGAGGAGATTGTGGAGGACGTCAAGGAAGAGTGCTCCAAATACGGCCAGGTCAAGAGCATAGAGATTCCCCGGCCTGTCGATGGCCTTGATATCCCTGGAACCGGCAAGATCTTTGTGGAGTTCACATCGGTTTACGACTCCCAGAAAGCCATGCAGGGCTTAACGGGGAGAAAGTTCGCCAACAGGGTGGTGGTGACCAAGTACTGCGATCCAGATGCCTACCACCGCCGAGACTTCTGGTAGAGGGAAGAGAGCAAGATAAATGGGATGGAGTAGCAGCTTTGCGATTAATAACTCGTAAAAAGAGAGAGAAATTGAGGCAGAGATGACAAAGGGGGAACATCTTTTTTTTTTTTTTTTTTTTAATGCTTAAAAAAGCCAAAAGTGAATGTTGTTTTTTTTTGTTTTGTTTTGAGGCTTAAATTAAAAGATGATTTGTGAGCAATTATGGGAGGGTTTTTGCTTTCATTTGTATTTTAAGAATATTAGCAGGAGATATTCTGTTATACTGATTATACTTATTCTGTTA

Function

symbol description
u2af2b Predicted to enable poly-pyrimidine tract binding activity and pre-mRNA 3'-splice site binding activity. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of U2-type prespliceosome; U2AF complex; and commitment complex. Predicted to be active in nuclear speck. Orthologous to human U2AF2 (U2 small nuclear RNA auxiliary factor 2).
u2af2a Predicted to enable poly-pyrimidine tract binding activity and pre-mRNA 3'-splice site binding activity. Predicted to act upstream of or within RNA processing; cell differentiation; and female sex differentiation. Predicted to be located in nucleus. Predicted to be part of U2-type prespliceosome; U2AF complex; and commitment complex. Predicted to be active in nuclear speck. Orthologous to human U2AF2 (U2 small nuclear RNA auxiliary factor 2).
u2af2 Enables enzyme binding activity and pre-mRNA 3'-splice site binding activity. Involved in mRNA splicing, via spliceosome; negative regulation of protein ubiquitination; and regulation of RNA splicing. Located in nuclear speck. Part of U2-type prespliceosome and U2AF complex. Colocalizes with Prp19 complex.

GO:

id name namespace
GO:0000243 commitment complex cellular_component

KEGG:

id description
K12837 U2AF2; splicing factor U2AF 65 kDa subunit

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000321_03749658_03759359.mRNA True 1629 mRNA 0.49 11 3749658 3759645

Neighbor

gene id symbol gene type direction distance location
CI01000321_03739229_03740955 NA coding upstream 8668 3739229 ~ 3740990 (+)
CI01000321_03714795_03718845 NA coding upstream 30573 3714476 ~ 3719085 (+)
CI01000321_03702229_03709660 NA coding upstream 39850 3702088 ~ 3709808 (+)
CI01000321_03680978_03683234 SBK2 coding upstream 65979 3680978 ~ 3683679 (+)
CI01000321_03674424_03676748 NA coding upstream 72654 3674424 ~ 3677004 (+)
CI01000321_03767896_03783640 CNOT3, CNOT3B coding downstream 8251 3767896 ~ 3783926 (+)
CI01000321_03795430_03804685 SHISA7B, SHISA7 coding downstream 35656 3792915 ~ 3805511 (+)
CI01000321_03811184_03815473 ZNF865 coding downstream 50650 3810295 ~ 3815631 (+)
CI01000321_03820289_03828024 DBP, DBPA coding downstream 60479 3820124 ~ 3828772 (+)
CI01000321_03898978_03936261 GRIN2DA coding downstream 139333 3898978 ~ 3936261 (+)
G457874 NA non-coding upstream 11065 3736446 ~ 3738593 (+)
G457872 NA non-coding upstream 17548 3722749 ~ 3732110 (+)
G457859 NA non-coding upstream 53453 3692881 ~ 3696205 (+)
G457842 NA non-coding upstream 114178 3631777 ~ 3635480 (+)
G457797 NA non-coding upstream 177531 3507969 ~ 3572127 (+)
G457878 NA non-coding downstream 78662 3838307 ~ 3838532 (+)
G459126 NA non-coding downstream 339376 4099021 ~ 4102339 (+)
G459178 NA non-coding downstream 476859 4236504 ~ 4236726 (+)
G459180 NA non-coding downstream 488961 4248606 ~ 4248923 (+)
CI01000321_00815160_00819665 NA other upstream 2926811 815160 ~ 819749 (+)
G456774 NA other upstream 3322633 426083 ~ 427025 (+)
CI01000321_04013470_04014515 CACNG8 other downstream 246981 4013468 ~ 4015412 (+)
G459303 NA other downstream 725752 4485397 ~ 4488552 (+)
CI01000321_04515562_04517953 MRPS21 other downstream 755889 4515534 ~ 4518187 (+)
CI01000321_04748037_04748315 DPM3 other downstream 987767 4747650 ~ 4749579 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location