CI01000321_03795430_03804685 (SHISA7B, SHISA7)


Basic Information

Item Value
gene id CI01000321_03795430_03804685
gene name SHISA7B, SHISA7
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 3792915 ~ 3805511 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000321_03795430_03804685.mRNA
TTATATATTGCCACACTGACTTGCAACTTTTGATAGACGTCAGCTTTTTGTAGGCCTCAGAAGTCTTTTGTACAAAGGCTTCACATTTTTTCATCTTTGATTAAAAAAAAAAACATCCCCTATATCAAGATGCCACCCGCTGCCATCTTGCTTTTCTTTCTGTTCTGCCCTGTGGTCTCCACAGTGACTATTACCTCGGAACGCTCCTCAGTGAATGGGGGGCCGGTGTTGCTTCTGTTGCGAGGACGCGGCCGCAAGGTCCCTCAGCCCGACATGCGGGACAAAGAGGCCGCTGCCATGGCGGCAGAGCCAGAGGCAGCCGAAATCCCTCCGAAACCCTTGCCGCAGATTATGCTACCCCGCAATGTGACGGCCGATGCCCTGAAGCCTCCGCTGGGAGCTGCACAGGTGGCGCCGCCTCCTCGGCGACTGGTGGACGTGGACGTGTGTCAGGGCTACTACGACGTGATGGGACAGTTTGACAACACTTTCAACTGCACCAAGGGCACCTACATATACTGCTGCGGAACCTGCCATTATCGCTTCTGCTGTGAGCACCAGCGCAGCCGTCTAGACCAAGACTCCTGCACTAATTACCGCTCACCCGAATGGGCCGTCACGACTGGACCCATCACCCAGCCCCCGGTCCGACACGACCCAGATTTCGACCCGCTGCAGCAACAGAACAACAGCACGGCTTACGTCATTGGGGGAGTCATCTCTTTTACCATGGCTGTGGCCATTGGGATTAAAGTGGCCTTCCATAAACTTTCTCGACGACCGAGGAATAGAGACATCAACATGCCTAGAGCGCTGGTGGACATTCTGCGTCACCAGTCTAGTCCAGTCCAGCAAGGAGAGAGGAACAACAGCACGGTCCTAACAACCGCCACATCCAGCGAGGGCACACTGGGGCGGCCATTGAAAAACTTCTACACTCCCGTCCTCCAGAGCAAAGATAACCGGACTGGGAAACACAGTTTTGGACAGACTGGGTCCAGTCCTAAACACACAACTACTATCGAGCGAGTTCCACGCATGAACAACACCCAGCTGGCCTCGACAGGAACACTGCTGTCCAGCAAGCACAACAATTCTGGTTTTCACCCCTCCTTCTCTCACTCCTTCCACAACCTTGCCCAGCTACCTCCATCATACGAGACCGTCATGAAACCAGAGCTCAACCGCTACAGCTCCCTCAAGAGACTAGAAAAAAACCTGGATGAATATTCTGGATATTACACCTCCAAGCGAAGGCCAAACAACGCTCCACCCAGTTTCCACTCCTCCCAGCACCACCTGCCCTGGGGCGGTGACTTCACACTGGGTGCCAGGGGAACCCTACCGCTAAACATGTCCCGTACGCGCATCCATGTGTCCAGTTCCACTTCCACCCCCAACCCCTACCCTTTACCCCAGACGCAGTACAACCCCACGTTCGACACGATGAGTAAACCGCCTCGCCGGGTGATGTCCCAAGACCAGCTTCTGGCGCTGGGGGAGGGGAATACTCTCTCACGCCTCTCCAAGAACCAGCAGCATCAGTATTACAAACCCATGACCACCAGCAAGAGCTCCAACACCCAGACTTTGCGCAAGTCTCACGAACGCCTCCTGGTGTCGCCAGACCGCCTGGAGGAGCGAATGATGGCCGATTATGGCGGGATGGTGCCCACCTCATCTCGTCTCACCCATCACCAGAAAGCGCAATCCCAGCAGAACGTGTGCGTGACGCCCTCGCTTGACCGCCATCACATGATCAAAATGAATTCGCACCCTACCTCCGGCCGCGAGCAAGACCACTCGGTCGCCGCAATGTCGTCCGGTCATGGGGCTGGGACTTTGGGATGGGGGGAGCTGTCTCCACATCAAATGGACACTGTTGTGGTGGAATGTCTGAGAACGACCTGGCTGAGCAAGATTATTGGGCCATAATATAGTATTTTAGATCACTCTGCAATGTTTAAGCTTTTATTAACTTGTTA
>TU525592
ATGATGGATAGATGAGGTGTGATTGCGCAAGCCGGAGGGAGGGAAGACGGTGGAGTGTAAAAAAGGCAGAAGACAGAAATGAAGAACGAAAAAGAGGAAGGAGGTCAGGAATGAGGCCCATTTGAAGAGAATACACAGTGTATCACTATTGAGAGAAAGAGGGATATGAGACTATACCAAGTGATTCTGTAGATCCCTAAATTGCCAAATTCTCAACAAATAGAAACGTGAAGAGGGACTGAGGTTTCCTCTGACCTGTGTGTAGCATATAGTGTTTTGATGGCACCATGGAGATACAAAAGTGGAAAGGTTCATTATTAGAATAGGCCAAGTTTTCTCTAGTTAGCACATTCCAGCTAATGTAAAAGCCAATTGGTTTAGGAGTTAATTTTTGTTTTTCTGAATCCAATTATAGCAGTTGACCTTGCCTCAGAGTTTGCCAATTATTTTTGGTTTCATTCAACGCAAAGTGTCATTCTCAAAGAGGTGTGGGTGTGTGTCACCTTCATCTGTAAAACAAGAGAACAATGAGATACACTGGATAAAACTGACAAGTGTCCAATAGTGTCCTGAATTACCTCATGGAAACTATGATTTGACCGTTCTCAAATCAGATTTGACTTGACTTGGGAATGGATTGTGACTTGGGGAGTATTGTGCGTTTGCCATCAAGTGAAGAAAATGCTGGTAATTCGTCAGAAAGAAGAACTTGGGACTTGAAAAAAAGTCACTCGTTTTGTGACCTGACTCTTTAGTCTGCACTGTTAATATGAGTCCAAATGCCATCAGCCATATTAGAGCTTATTCATATGGAATACAATGGAGGAAAACATTTTCATTGGGAAACGGGTGTTATATTGATGATCAGATATTTTTAGCATCTTATACTCAAGACTGTGAATCAAAGCTGACATGAATACTTGTCGGTTTGGTTTTTTTTGCATTGTGGATAACATTTTGGCTGTTTTATAATATGATCAAAAGACTGTCAGATTGATGGGTAAATCAGGTCATACTATCTGAACTAGATATGTTTGAGTAGACAGATATTTGGAAACTGAAGTCAGCCATTCAAATCTGATAGAAGTCATGCCTCTTTCTTGCATGTTTGACCAGTCAGAGAATAGCTTCGTATGACGGCATCAAACGTTCTGGAGTTACGGTTGTTCTGTTATTAAGTGTTAAGAGCTGAGATTTAGTCATGGGCATGCAGTATGTCAAATAAGACAGCATAGTCTTCACACTTCATTTGCAAATCAAGCTGTTGTATTGAGGGGGGACAGGGGAACGGGTTTACTTATACAATGGACAATTTAATCCAAGGGCTATTCTGAAACTTCTTTATGTGTGTCTGTGCTTCCGTGTTCTTACGGCTTTTTATCTTTTCCCGTGACACGGCTGTGCGGAACATAGAGGCTACATGCCAATGTAAAACAGAAAAATAGAACAAAATCTGCAAAGCTACTTCAACACTCTGTGTCACACTAGGATGCATTATTTAACCGATGAGATAAAATTTAGGAGTAAAAGGTGTCTTGTTTACCTATATTATATTCAAGAAAAATGTCTTTTTTTTGTTAGCGATTTCTGTGTGTTTTTCAGCTGTCTCCACATCAAATGGACACTGTTGTGGTGGAATGTCTGAGAACGACCTGGCTGAGCAAGATTATTGGGCCATAATATAGTATTTTAGATCACTCTGCAATGTTTAAGCTTTTATTAACTTGTTAATAAAACTGAAGTTAAATATGTTGAAAAAGATAAAAAAAAATTGAATTGAATCCCGAATGTTCAAATATGTACACATGCCAATTTATGTGCATATATATATAAATATATATAGTCATCAATATTATTCATATTCTTGATTATTATCATTGTTTTATTTTTTTTCTCTGTGACTTTAGAAATTGTTTTTATTCCTGTTTTCTGTTTATATTTGAGTTTATAGTGGATTCTAACCTTTGTAACTCAACAAAAAAGCAGATGCAATCATAGTGAAAAGACAAAACGCATGAAGATGTCAAAGCCAGTGTTGATGATGTCATATTGCTGACTTCTGATGTCAAGGTGTGTATGTGTCCAGTTTGTGTGTCTGTATTTGTGTGCTTGTGTGTATTTCAGTGTCTATTTTGGAATGCTTTATCTCGCATTTTATCTGACTTTTGCCTTGTGTGAAGTCAGAGAATGTGCATTTCAGAAAACCCAAAATATTATTTTATTTTTTAAGTGTCTCTTTGAATGCAAAAAATAAACAAATCATAAAAAAAATATTTTCCATTGCTGCATTCACCAAAGTTATGGAAAACAGAATAAACAACCATAATTTATTTTTTTTTTTTTTCCAGTATTTTTTTTCTTTTTTTAGATATAAATGTTTCTTGCCATGAATTACATAAACCATGTTGTAAATTTTATGGGGAAAATGCCAAAATGCCATGCATAAAATATTTACAGCAAAAACTTTAATTATTATTTTTAAATAAAATTCTCGCCATTAAGAAAA

Function

symbol description
shisa7b Predicted to be involved in regulation of AMPA receptor activity and regulation of short-term neuronal synaptic plasticity. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in dendritic spine membrane; postsynaptic density; and postsynaptic membrane. Orthologous to human SHISA7 (shisa family member 7).
shisa7 Predicted to enable GABA receptor binding activity and ionotropic glutamate receptor binding activity. Predicted to be involved in several processes, including gamma-aminobutyric acid receptor clustering; regulation of signaling receptor activity; and regulation of synaptic plasticity. Predicted to be located in asymmetric, glutamatergic, excitatory synapse. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in glutamatergic synapse; postsynaptic density; and synaptic membrane. Predicted to be integral component of postsynaptic specialization membrane.

GO:

id name namespace
GO:0048172 regulation of short-term neuronal synaptic plasticity biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000321_03795430_03804685.mRNA False 1985 mRNA 0.55 6 3795301 3804735
TU525592 True 2506 lncRNA 0.35 1 3803006 3805511

Neighbor

gene id symbol gene type direction distance location
CI01000321_03767896_03783640 CNOT3, CNOT3B coding upstream 11375 3767896 ~ 3783926 (+)
CI01000321_03749658_03759359 U2AF2.S, U2AF2, U2AF2A, U2AF2B coding upstream 35656 3749658 ~ 3759645 (+)
CI01000321_03739229_03740955 NA coding upstream 54311 3739229 ~ 3740990 (+)
CI01000321_03714795_03718845 NA coding upstream 76216 3714476 ~ 3719085 (+)
CI01000321_03702229_03709660 NA coding upstream 85493 3702088 ~ 3709808 (+)
CI01000321_03811184_03815473 ZNF865 coding downstream 5560 3810295 ~ 3815631 (+)
CI01000321_03820289_03828024 DBP, DBPA coding downstream 15389 3820124 ~ 3828772 (+)
CI01000321_03898978_03936261 GRIN2DA coding downstream 94243 3898978 ~ 3936261 (+)
CI01000321_03937712_03954703 GRIN2D coding downstream 132697 3937432 ~ 3955589 (+)
CI01000321_03981145_03984891 NA coding downstream 176410 3981145 ~ 3984984 (+)
G457874 NA non-coding upstream 56708 3736446 ~ 3738593 (+)
G457872 NA non-coding upstream 63191 3722749 ~ 3732110 (+)
G457859 NA non-coding upstream 99096 3692881 ~ 3696205 (+)
G457842 NA non-coding upstream 159821 3631777 ~ 3635480 (+)
G457797 NA non-coding upstream 223174 3507969 ~ 3572127 (+)
G457878 NA non-coding downstream 33572 3838307 ~ 3838532 (+)
G459126 NA non-coding downstream 294286 4099021 ~ 4102339 (+)
G459178 NA non-coding downstream 431769 4236504 ~ 4236726 (+)
G459180 NA non-coding downstream 443871 4248606 ~ 4248923 (+)
G459181 NA non-coding downstream 444334 4249069 ~ 4249296 (+)
CI01000321_00815160_00819665 NA other upstream 2972454 815160 ~ 819749 (+)
G456774 NA other upstream 3368276 426083 ~ 427025 (+)
CI01000321_04013470_04014515 CACNG8 other downstream 201891 4013468 ~ 4015412 (+)
G459303 NA other downstream 680662 4485397 ~ 4488552 (+)
CI01000321_04515562_04517953 MRPS21 other downstream 710799 4515534 ~ 4518187 (+)
CI01000321_04748037_04748315 DPM3 other downstream 942677 4747650 ~ 4749579 (+)
CI01000321_03795430_03804685 SHISA7B, SHISA7 other upstream 124 3792915 ~ 3805511 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G174201 NA non-coding CI01000036 null 1711530 ~ 1711763 (+)
rainbow trout (Oncorhynchus mykiss) G2321632 NA non-coding NC_050572.1 CM025859.1 34789371 ~ 34792949 (+)
tiger barb (Puntius tetrazona) G133948 LOC107693373,LOC107724108,LOC107739520,LOC107599537 unknown NC_056717.1 CM032086.1 17330697 ~ 17334234 (-)
mexican tetra (Astyanax mexicanus) G309942 NA non-coding NW_019172854.1 APWO02000060.1 848144 ~ 850962 (-)