CI01000321_03898978_03936261 (GRIN2DA)


Basic Information

Item Value
gene id CI01000321_03898978_03936261
gene name GRIN2DA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 3898978 ~ 3936261 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000321_03898978_03936261.mRNA
ATGGCGGCGAGGCCCGCCCTTTCGTTTCTATTGGCTGTGCTGGCGTGCACTGGGCCGGCCCAGCCCTCCCCCCCACTGCTGCTCCGCCCCCGGGAGAGAGAGAGGGACTCAGGAGGGGCTTCGGGCGGAGTCAACATCGCTGTGGTTCACTCTGGCTCCTCCCACCTCCCGGAAACGAGCGCTGGGGTGGGGGGTGTGGGCGGTGCCTCTTCAGCGGGCTCCGGCTCCGGTGCCGGGCCAAGCAGCAGCAGCAGCAACTCGGGGACGGGTTTTCTAAGTCGAGCCTGGTCAGGACAGGTGGGTGAAAGTGTGATGACGCCGTGGGGTCCTGCGAACGTGATCTGGCTGGCCGTGAACGAGAGCAGTCCTGGGAGCCTCTTGCTACAGTTATGCGAGTTACTGGCTACCACTCCGCTACAAGGCCTTGTGTTTGAGGAAGAGAAGCCACCACCGCCCAACCGGGCACCGTTAGCACCTATGCTGGAATTTGTCTCGGCCCAGACAGGAGTGCCTGTCATTGCTGTGGGAGGAGGGGCTGGTCTGGGGAGGGAGCCACAGGAGAGCGGCTCCGTCTACTTGCAGTTCTTGTGCTCCACTGGCCTGCAGCTGGAGGTCATTTTTGAAGTCCTGGAGGAGTTTGATTGGACAGCGTTCTCTGTGGTTACCACACGCCACCATGGCTATGAGGATTTCCTGGCCATGGTGGAAGGCATGATAGATGGCTCCTTCATCGGTTGGGAGAGAAAGAGTGTGGTGATGCTCAACCTGACCGATGACCCGGGAGGGGCTCGTACCCGCAGGCTACTGAAGGAGAATGAAGCACAGGTACGACTCCTGTATTGCTCACAGGAAGAGGCGGAGCACATTTTTAAGGCTGCATGGGCATCAGGGCAGGCTACTCCCTCACATATGTGGTTTGCGGTGGGCCCGGCTCTGTCAGGACTTGGTCTTGAGGGTCTACCCAAGGCTCTGTTCGCTGTGAGGCCACAGGGATGGAGGGACGAGCCACGACGGCGAATTGCAAAGGGTGTGTCGGTACTGACGCACGGTGCTATGGCTTTGCGTAGGGAGTATGCCGGGGCTCGAGGGACGAGCTTCGCCGGGAACTGCATGATGGATGGAAATCAAACCCAGAGGGTGCCAGATAGGATCAGGTTCTTCAGTAACATAACTCTATCTGGACGGGACTATTCCTTTAATAATGACGGTTATCTGGCAAATCCGCTCCTGGATGTTATCTCCTACACTGCAGGAAGAGGCTGGGAGGAGGTAGGTTGGTGGGAGAATGGAGTGCTGCGTCTGCGTTACCCGCCCTGGTCCCGGTACGGCCCTTTTCTCAAACCTCTGGATGATTCCCAGCACTTGCGAGTGGTTACTTTGGAGGAGAGGCCATTCGTCATCGTAGAGCCTGCTGATCCTGGAACAGGCTCCTGCATCAGAGACTCTGTTCCGTGCCGTCTGCCACTCAACAGC

Function

symbol description
grin2da Predicted to enable NMDA glutamate receptor activity. Predicted to be involved in excitatory postsynaptic potential and long-term synaptic potentiation. Predicted to act upstream of or within ion transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be part of NMDA selective glutamate receptor complex. Predicted to be active in postsynaptic density membrane. Is expressed in presumptive neural retina; retina; and somite. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 46. Orthologous to human GRIN2D (glutamate ionotropic receptor NMDA type subunit 2D).

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0006810 transport biological_process

KEGG:

id description
K05212 GRIN2D; glutamate receptor ionotropic, NMDA 2D

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000321_03898978_03936261.mRNA True 1473 mRNA 0.59 5 3898978 3936261

Neighbor

gene id symbol gene type direction distance location
CI01000321_03820289_03828024 DBP, DBPA coding upstream 70206 3820124 ~ 3828772 (+)
CI01000321_03811184_03815473 ZNF865 coding upstream 83347 3810295 ~ 3815631 (+)
CI01000321_03795430_03804685 SHISA7B, SHISA7 coding upstream 94243 3792915 ~ 3805511 (+)
CI01000321_03767896_03783640 CNOT3, CNOT3B coding upstream 115052 3767896 ~ 3783926 (+)
CI01000321_03749658_03759359 U2AF2.S, U2AF2, U2AF2A, U2AF2B coding upstream 139333 3749658 ~ 3759645 (+)
CI01000321_03937712_03954703 GRIN2D coding downstream 1171 3937432 ~ 3955589 (+)
CI01000321_03981145_03984891 NA coding downstream 44884 3981145 ~ 3984984 (+)
CI01000321_03989853_03999565 CACNG7 coding downstream 53468 3989729 ~ 4001036 (+)
CI01000321_04013470_04014515 CACNG8 coding downstream 77209 4013468 ~ 4015412 (+)
CI01000321_04022562_04030274 CACNG8A coding downstream 86301 4022562 ~ 4030336 (+)
G457878 NA non-coding upstream 60446 3838307 ~ 3838532 (+)
G457874 NA non-coding upstream 160385 3736446 ~ 3738593 (+)
G457872 NA non-coding upstream 166868 3722749 ~ 3732110 (+)
G457859 NA non-coding upstream 202773 3692881 ~ 3696205 (+)
G459126 NA non-coding downstream 162760 4099021 ~ 4102339 (+)
G459178 NA non-coding downstream 300243 4236504 ~ 4236726 (+)
G459180 NA non-coding downstream 312345 4248606 ~ 4248923 (+)
G459181 NA non-coding downstream 312808 4249069 ~ 4249296 (+)
G459182 NA non-coding downstream 313970 4250231 ~ 4250465 (+)
CI01000321_00815160_00819665 NA other upstream 3076131 815160 ~ 819749 (+)
G456774 NA other upstream 3471953 426083 ~ 427025 (+)
G459303 NA other downstream 549136 4485397 ~ 4488552 (+)
CI01000321_04515562_04517953 MRPS21 other downstream 579273 4515534 ~ 4518187 (+)
CI01000321_04748037_04748315 DPM3 other downstream 811151 4747650 ~ 4749579 (+)

Expression


Co-expression Network