CI01000321_03937712_03954703 (GRIN2D)


Basic Information

Item Value
gene id CI01000321_03937712_03954703
gene name GRIN2D
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 3937432 ~ 3955589 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000321_03937712_03954703.mRNA
GTATTTAGATGAATAATAACCTTTTTCTATTTGATCACATCTCCAGTGCTGGTTTTTAAAACAGCAGACCGTTTCCTTTAAGAATCTTATGCTTTATGCTGATAGACCCCAGATTATGTGTGTTTGCCTTAGGTGACAAAGCACTGAATTCTAAGCAGGGATGTTCATTTAGTTTTTTTTGCTTGGTTTCTCTACATTATTTCTTTCTTTTGTCACTGTCCCCTTTCTGTTTCTTTTTCCTTTTCTATGTCTTTCTCTTCTTCTTCTTTTCAATTACAGCATGGTTGTTGAGGGCATTCAATCCATGAAGCACTGCTGCAAAGGCTTCTGTATTGATGTTCTCAAGCGCCTGGCTAAAATAGTGGGCTTCACCTATGACCTCTATCTGGTGACCAATGGCAGGCATGGAAAGAACATAGATGGAGAGTGGAATGGAATGGTTGGGGAGGTGGTGTCCAAGCGGGCCGACATGGCGATCGGCTCCCTGACTATTAATGAGGAGAGGTCAGAGGTGGTGGAGTTCTCTGTTCCGTTTGTGGAGACTGGCATCAGTGTCATGGTCTCTCGTAGCAACGGCACTGTGTCACCATCTGCTTTCCTCGAGCCGTACAGCCCAGCTGTGTGGGTGATGATGTTCGTCATGTGCCTGTCTGTGGTGGCTGTGACCGTTTTTATATTCGAGTTCTTCAGCCCTGTTGGATATAACCGAAGCTTACAGAGCGGGAAGAAGGCAGGAGGTTCAAAGTTCACCATAGGGAAGTCTATTTGGCTGCTATGGGCTCTGGTTTTTAATAACTCAGTTCCGGTGGAAAACCCGAGAGGCACTACCAGTAAGATAATGGTGCTGGTCTGGGCTTTCTTTGCTGTCATCTTCCTAGCCAGCTACACTGCTAACCTGGCTGCTTTCATGATCCAAGAAGAATACATCGACACTGTGTCAGGCCTCAGTGATAAGAAGTTTCAACATCCCACAGAGCAGTATCCTCCCTTACGATTCGGCACTGTCCCAAACGGGAGTACGGAGGAGAATATACGGAGCAATTACCCCAGCATGCATCAGTACATGGTGCGGAACAATCAGAGAGGAGTGGAAGAGGCCATCGACAACCTTAAAACCGGCAAACTGGATGCATTCATATATGATGCGGCTGTCCTGAACTACATGGCTCGTAAAGACGAGGGCTGCAAAGTAATGACCATTGGCTCTGGGAAAGTGTTTGCTACAACAGGATATGGCATTGCCTTACACAAGAACTCCCGCTGGAAGCGGCCTTTAGACCTTGCCCTGCTGCAGCTAGTTGGAGATGATGAGATTGACATGCTTGAACGACTCTGGTTGTCTGGGATCTGCCATAATGATAAAATTGAGGTGATGAGTTCCAAACTGGACATAGACAACATGGCAGGAGTCTTCTATATGCTTCTGGTTGCCATGGGCCTAAGTCTGCTGGTGTTTGCGTGGGAGCATCTTGTCTATTGGAAGCTTCGCCACTGTTTGGGCCGCTCTGGAGGACTTGACTTCCTGCTGGCTTTCAGTCGGGGAATGTACAGCTGCTGCAATTTTGAGGATGAAACAGCTCCTGGAGGTGGACATTCTGGAATGGCTCTAGGGCCATCGAACAGTCCCATTCTTGGAGCACCCATGCCTTGCTCTACTTTCCTACCACGCCATGATCGCAGATTAGCTGTGGTGGATCGGTGGACACGTCCAAAGGTGGGTCCTGAGAAGCCCGGTGGTGTGAGCAGTGGGATTACAGACTTAACACAATTCCAAGGCATGCCCTCTCACTGGGGTGCAGGAATAACTGGAGGGGAGGGGGGTCTGGATGAGTACAAGAGATACTATGGGCCAATTGATCCAGAGGGCTTAGGGGTCTCTGCAGAGCCTCAAAACATAGGCACTCAAACTCCAAAATCTAAGCATCGAGGAACAAAATCCTCTGGAAATCCACGGTTACCTCCTAAAGGTCAAGCTTCTGGACACTTACCAATTAACCCTGCTTTGCCACATCTCTCTCCACCCCATCAATCTGTCTGGAGGAGAAGCAGCTTCTCAAAAAGGAAGGGCTCAGGGGGGCCACTGTACGAAAACATCCTTCCACTAGGAAGAAGAGGTGGGGGCAGATATGGAATGAGGGACGGTGGTGGAAGAAGAGGACGTCGTCCTCCTCCCCTTCCTCTGCCTATACCTGTGCCCCTTTCTTCCCCAACACAAACTCCACCCTCACCTTCTCCAACTATATGCTACACATCCACTTCCACCAGCAGCTCCAGTACCACCAGTTCATCCTCTTCTTCAGAATCAGTCTCCCGATCCAATTCTCCCTCCTCTTCATCATCATATACATCATCACAAAGCTTCAGATACCGGACAGATGTGCAAGACGTGTATGAGGACTATGACACCGATGAGCTTACAGAGGAATCAAGCTTGCTTTTGGGGAGGAGAAAAAGTCGTTCACGTATGTCTTCTCGATCCCTGCCCAGCAGTCCTCCACCACCACCTATACCACCCCGCAAACCTTGCGCACAGAGGGCGCAGCGACCTGAACAAGAGGAAGTAGATTTGGACAGGAAAGATGTGTTCGAAAAAGGAATAGGACAGGAATATTATTCCTATCCTGCACTGAGACGGAGCTCTTTCAGAAAAAAAAGTGAAAGCTCTACCAGAAGTTATGAGTGGGATGTTATCAGAGATGGAGTGAAGAGAGATAGGGATGATCAAGGAGGAGATAATGAAGAACCCAGTAGGGGAAAGGAAAGGCATCACAGAAGCCCAAAATCCCTTCGCCACTCTAGGCCAAGGTCCAACAACAAGCATTTTTCCACCTCAAACAAACCTTCTTCAACCGTCAAATTTTGGGGTAGTGGGAACCCAACTTCAGAGTCTCAATCGTCTTTTGTACCCCTACTTCCTATCGCCTCTAAAAGACGAAAGTCTGTAGGAGCTGAAAGAGATGAGCATGGAAGAGGTGTAGAGAGTCGGCCCTTATTGGGAAATCACTGTAGAGGTAAGCCTTGCTCGAGAGAAGGCTTGTCGTTTCAGGAATGGGAATCCGAGGAAGAAGATGAGGAGTCTGAAGTGGAAAGAAGTAGGCCAGAAGAACAGGGGAGACGGCGAGAAAGCAGAGGAATGAACTCTGAGTCTGAAAGGGACAGAGAAAAAACTGTTGAGATATACACAGATGATGAAGGTTCCTCAGGAGAGTTTGGTAAGTTTGAGAGATACTGGGAGGGTCACGAAGGAAGGGCAGTTGGAGGCATTGGAGGAGGAGGATGGTTCTTTGGCACCTACCCAGCCAGAGAAAGAGGAAACAGTATAAACAGTAGAGATGACTCCTTTTTGGGATTGGGTGGTGGAGAAAGTAGCTTGGGGTTTGGTGCAGGAGCAGGATGGGGATCAGGAGGCTTAGGATCAAACCAGTGGCCTCCAACTCCATTGACTCCCCCACCTCCTCGAAGATACTGGTCTGTTGATAAATTACCAGTCAAGACTGAAAAGAAATCTAAAAGCAGGTCTCAAGAGAAGAGTCGAGGCCACACATCCTGTTCCTGCCAGTCACCCCATCACTCTGCCAGCACTCACTCCAAATGGAATCGGGTGACTTCTAGGAGTCAGGAGGAACTACTCCCCCACTGCCACAGTTTCAGCAGCAGCGTAAGGCCCAAACGGCAATCATCCAAACCGGATCGGGCTCAGAGCCAGGCAAAATCTGGAAGCCAATCCAACCTCAATGCACAAAGACCACAGCGCTCAGACCGGTCCCGACAACCGCCATCCCCTCCTCAGAGTCTACCACCTTCTTTACCCTCTCCAATGGTCCCTGCACTCCCAGCACCACCCTCTTCCTCTCACCATATACATGTACCACCACCTACATCCTCTTCCTCTGTGTCCTCCCCTTCAGTTGTCTCATCTACACCTGGTGCCCCACAGCCCTCCTCTTTGTCCTCCTCTAGTGCTAAGCTCCAATACCAGAAACTGCGGTCAGTTCCCCAACCCCAAAGGTATCAATCCCCACATCTTCCCCTCAAAACCAAGAGCCTATGCTCCCGTCGAGGCTCTGCCCAATTCTCCAGTGTGGAGAGTGAGGTTTGAGCAACATAATGAAATGAGGAACATCAGCAAGTAGCCCCAGGGGCGATCAAGTCACCTGCTCATGCCACAAACTGTTAACTGTTCATAGCAGTCGAGTTGGGTTGTTTTTGCTGGCACCCTCCTCTTGCACAAAAGCTCTAATGCTCCTTAGAGACAAACCTGGATTGGGATGTCACATAATTTGTAGCCCTTTCTCTTTTCTTGTGTAAGAATGGAGTACTGCCATGCTGACAAATCTTGTCGATGTTAGCGAGGCTGTTCATATGGAATTGGCTTTGCTTCTCTTACTTGGGGGCTGTAAGGTGGAGTGTCGATAATGTGGGTGAATTTTTGTTGGAGTGTTTTGCTGCTCGATGGCTCAGGAACGATTTTTTCAAAGGGAGATTCTGAGGTCAAAATACAATGCCCTAACACCCCGCACCCATCTTTTTTCTCTCTCTCTCTCTCTCTTGCTCTCAGAGCTCTGAATCATGATGTAGTTGTTGTGTGTATTTGTTCAAAATATCTCAAGGGAAGCATTCACAAAGAAAAGTAGCAATCCATTTTTCTCCTCTCAGTGCATTTTCCTTGACCTCTACCTTCCGCAAAATGACATCTAGCACTCTGTGTTGTCGTCAGTGTTTGTATTCCTAGAAACAGGGTAAGTTAGCCATGACTGATCACATATTGGTTTACTGAAGCTGAATGCCAAACTTAAGTGGAGCTGATGTACAGTCCTGTTCTGTTGAAACCATTTCACAAGTCCTCATGTTTCATTCTTGTCCCTTGAGCAATACATAATTAACTACGAACAGCATTCAATACATATATTTTATATTTAAAAGTTATTTTATTATATATAATATATATGTTTTGTGATCTGGTTCAAAACAGTTATGTTAAATTA

Function

symbol description
grin2d Enables NMDA glutamate receptor activity and glutamate-gated calcium ion channel activity. Involved in calcium ion transmembrane import into cytosol. Is integral component of plasma membrane. Part of NMDA selective glutamate receptor complex. Implicated in developmental and epileptic encephalopathy 46. Biomarker of schizophrenia.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000321_03937712_03954703.mRNA True 4985 mRNA 0.47 10 3937432 3955589

Neighbor

gene id symbol gene type direction distance location
CI01000321_03898978_03936261 GRIN2DA coding upstream 1171 3898978 ~ 3936261 (+)
CI01000321_03820289_03828024 DBP, DBPA coding upstream 108660 3820124 ~ 3828772 (+)
CI01000321_03811184_03815473 ZNF865 coding upstream 121801 3810295 ~ 3815631 (+)
CI01000321_03795430_03804685 SHISA7B, SHISA7 coding upstream 132697 3792915 ~ 3805511 (+)
CI01000321_03767896_03783640 CNOT3, CNOT3B coding upstream 153506 3767896 ~ 3783926 (+)
CI01000321_03981145_03984891 NA coding downstream 25556 3981145 ~ 3984984 (+)
CI01000321_03989853_03999565 CACNG7 coding downstream 34140 3989729 ~ 4001036 (+)
CI01000321_04013470_04014515 CACNG8 coding downstream 57881 4013468 ~ 4015412 (+)
CI01000321_04022562_04030274 CACNG8A coding downstream 66973 4022562 ~ 4030336 (+)
CI01000321_04063726_04074390 NA coding downstream 107102 4062691 ~ 4074493 (+)
G457878 NA non-coding upstream 98900 3838307 ~ 3838532 (+)
G457874 NA non-coding upstream 198839 3736446 ~ 3738593 (+)
G457872 NA non-coding upstream 205322 3722749 ~ 3732110 (+)
G457859 NA non-coding upstream 241227 3692881 ~ 3696205 (+)
G459126 NA non-coding downstream 143432 4099021 ~ 4102339 (+)
G459178 NA non-coding downstream 280915 4236504 ~ 4236726 (+)
G459180 NA non-coding downstream 293017 4248606 ~ 4248923 (+)
G459181 NA non-coding downstream 293480 4249069 ~ 4249296 (+)
G459182 NA non-coding downstream 294642 4250231 ~ 4250465 (+)
CI01000321_00815160_00819665 NA other upstream 3114585 815160 ~ 819749 (+)
G456774 NA other upstream 3510407 426083 ~ 427025 (+)
G459303 NA other downstream 529808 4485397 ~ 4488552 (+)
CI01000321_04515562_04517953 MRPS21 other downstream 559945 4515534 ~ 4518187 (+)
CI01000321_04748037_04748315 DPM3 other downstream 791823 4747650 ~ 4749579 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G179875 NA non-coding CI01000039 null 3262870 ~ 3264103 (+)
bowfin (Amia calva) G162187 LOC103393819,LOC106588445,LOC106570003 unknown PESF01000034.1 PESF01000034.1 46571 ~ 47027 (+)