CI01000321_04013470_04014515 (CACNG8)


Basic Information

Item Value
gene id CI01000321_04013470_04014515
gene name CACNG8
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 4013468 ~ 4015412 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000321_04013470_04014515.mRNA
ATGGTGTGGTGTGAGCGGGGAATTCAGGTGCTTCTCACCACTGTGGGAGCATTCGCAGCCTTCGCCTTGATGACCGTAGCCATTGGCACGGACTACTGGCTGTACGCTCGGGCCTTTATCTGCAACAGCACTGCAAACTCCTCTCAGGATGACCCACACAACAAGGACAAGAAGGATCCTGGAGCTCTCACCCACTCCGGCCTCTGGAGGATTTGCTGCCTGGAAGACATGGAGACTTTGTTAGCTTCCTAAGGATCTATTCCTTCCTGACTGGAAATGACTTTCATTGGTGTAACCTAATGCGGCCAGGTTGATTTCCTCATATTAAATAATATCAAAAAAAGAAAATTAATAAAACCTTTAAATTTTTTACCACATGAAGTATTTTTTTTATAAGGAAGAGGAAACAACCAGGGCACTGAGTCAGAACCCTAACACAAAATGATTTCACTGTCTAGCTTTAGGGTTACTTTGACACTACCAAAGGCATTGTGGGAAGCGTTGCCTCCAGATCCTTTTAGCCATTGGGCTCTGCAATGAGGGGTATTCACATTAAGCTAGTTGTTTTAACAGTACAGAGTACCTCATTTGCTCTAGCCAGGTCTCAAGAGACTGGTTTTAAACAAACATGGGCTGTATTTTTTTCCATTTGCATTAGAAACCTAGAAGAGTACATGTCAATGGCTATGATTATGTGATGAGTCATTGCAGGTCAAAGGTGCCTGCAGAGCTCTCATTGCATTTGCAGCATAATCAAACCAGACAAAAACAGTCATTTTGACTTATTATATTGCTCACTTCGGTTCTCTGGTTTATATAGTGCAAACTGATCTGATTTTTGAGGGAAATGTTTATTAATAGAGTTTCTTACATATTTGCATTGTCCACTATACTATATGGATAGGACAGTCAAGGAGAGACAGTGACTGTGGAAAGGACCATGTGCCGGGACTCGAACTCGGGTCACCTGAAACGTTGCTGTGCTGTGTTGGAGCACTGCCCACAAGGCTATGGCTCCAACTTCCACTATGTATGTTTTAATAATTTTATTAAAATACCACTATTGTAATTTATTGCAATAATAATCCTGTTACAAAAGTCTCTACTGAATATATAAGTTCAGTAAGTGAGTCAGACTTTGATTCAATA

Function

symbol description
cacng8 Predicted to enable calcium channel regulator activity and voltage-gated calcium channel activity. Involved in regulation of AMPA receptor activity. Predicted to be located in postsynaptic density. Predicted to be part of AMPA glutamate receptor complex and L-type voltage-gated calcium channel complex. Predicted to be active in Schaffer collateral - CA1 synapse; glutamatergic synapse; and postsynaptic density membrane. Predicted to be integral component of postsynaptic density membrane. Biomarker of dilated cardiomyopathy.

GO: NA

KEGG:

id description
K04873 CACNG8; voltage-dependent calcium channel gamma-8

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000321_04013470_04014515.mRNA False 1149 mRNA 0.41 2 4013470 4015412

Neighbor

gene id symbol gene type direction distance location
CI01000321_03989853_03999565 CACNG7 coding upstream 12434 3989729 ~ 4001036 (+)
CI01000321_03981145_03984891 NA coding upstream 28486 3981145 ~ 3984984 (+)
CI01000321_03937712_03954703 GRIN2D coding upstream 57881 3937432 ~ 3955589 (+)
CI01000321_03898978_03936261 GRIN2DA coding upstream 77209 3898978 ~ 3936261 (+)
CI01000321_03820289_03828024 DBP, DBPA coding upstream 184698 3820124 ~ 3828772 (+)
CI01000321_04022562_04030274 CACNG8A coding downstream 7150 4022562 ~ 4030336 (+)
CI01000321_04063726_04074390 NA coding downstream 47279 4062691 ~ 4074493 (+)
CI01000321_04082880_04096700 SLC2A3A coding downstream 67468 4082880 ~ 4097297 (+)
CI01000321_04120043_04140867 CLCN1A coding downstream 104631 4120043 ~ 4141293 (+)
CI01000321_04188431_04194328 ING4 coding downstream 173019 4188431 ~ 4194385 (+)
G457878 NA non-coding upstream 174938 3838307 ~ 3838532 (+)
CI01000321_03795430_03804685 SHISA7B, SHISA7 non-coding upstream 207959 3792915 ~ 3805511 (+)
G457874 NA non-coding upstream 274877 3736446 ~ 3738593 (+)
G457872 NA non-coding upstream 281360 3722749 ~ 3732110 (+)
G457859 NA non-coding upstream 317265 3692881 ~ 3696205 (+)
G459126 NA non-coding downstream 83609 4099021 ~ 4102339 (+)
G459178 NA non-coding downstream 221092 4236504 ~ 4236726 (+)
G459180 NA non-coding downstream 233194 4248606 ~ 4248923 (+)
G459181 NA non-coding downstream 233657 4249069 ~ 4249296 (+)
G459182 NA non-coding downstream 234819 4250231 ~ 4250465 (+)
CI01000321_00815160_00819665 NA other upstream 3190623 815160 ~ 819749 (+)
G456774 NA other upstream 3586445 426083 ~ 427025 (+)
G459303 NA other downstream 469985 4485397 ~ 4488552 (+)
CI01000321_04515562_04517953 MRPS21 other downstream 500122 4515534 ~ 4518187 (+)
CI01000321_04748037_04748315 DPM3 other downstream 732000 4747650 ~ 4749579 (+)

Expression


Co-expression Network