CI01000321_04274723_04276159


Basic Information

Item Value
gene id CI01000321_04274723_04276159
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 4273845 ~ 4276225 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000321_04274723_04276159.mRNA
GTACAAAAATGTGGAGAGATACCACAATAACCCACACAAATCTCATCCAGAATGAAAGGAGGGAGAAAATATTCCGAGAGGAAACAGGGATGAACATCACGACACACACAGCCAGATCCGGAGCATTTGGCTTTTGTGCATTTCAACAACGTCTCTTATTTAATGCCTCGATGCACCGAGCAAACCCCTGGATGAGATGTGCACTTTACCACATGAGTCCACAAGCTCGGTCGCTCTTCGTTAGCAGTTCCGACTATATGTCGCCCAAGCGTTTGCAAAAAAAAGTGGTTTAGATTGTTACTTTTCCGAACTCAAAAACTGAGCGTGCCTTTTTGCCTAGTGCTAATTGTACAAGTCAACTATGGCACACATACAGGCCTGAGATCTGTGGCCATTGTCTCTGATTCCCCTGAGCTAGCGGTCGACCGGATGGATGGACAGTTGTAGGGGTTCCCGGATGAAAGGATGATGGGCAGAGGAAGTTAGGGGAATACTGGGAACAGCGAGCAAGACAGTAACAGGGAAAGAGAACGACCCCCACAATTCCAAGCACGGCTTACCCTCCTGCATGTTCAAGCATGCATGGTGACATACACACGCACTCACGACACACACATACACATGCAGAATCACTTACAGGCAAAACCTACCATGCAAACGAACAGAATATTTGTAGCACAAGCATTAGACAAGAAAAAGTGAAGGAATGAAGAAACGATAATCTCAACACAAATCTCACACATGCTTTGATTCTTTGCTCCGCCGATGCCTGAACGCTGCACATCCCCAATATCAAATACGAAACAAGACAATCCAGAGAGAACTACGTGTATTCAATTGCAGGAAGCAAAAATAGAGAAAAAATAACGCTTTTGAACATGATTTCAAAAAGTGAACAAGAAATAGTAGGAGAGAATGAACATAGAGATAAAGTTAAAGATACGGATGGACAGAACGGGATAGTGACTGATGAAAAAGAGAGAACTAGAGGGTTAAAACAGAAAGACAAGAGGCAAATATCTGTGCATGGAAAAGAAGAGGATATTCCAGTCTGTGCTTTCCGCTCTCCGTCTCACTGTCTTCCAGGCGGAGAGAAAATGAGAGGAAGAAACCCTGTGCACATACATGTGTTCAGTGACTTTCTCAGAAATTACAGTCAACTGCACAAAACATTAATTCTTGGAGCCAGTTTTAAACAGGGGCATCTATTGTCTTTGAGGGGCCACCAGTGGCAGTCCTGGCTCACTCGATACCCTAAGGCGAGATACGATATAAGCAAATGAATACACTTTTTAACAACTTAGTAACTCTTTACATATGTGCAAGGCTTGTATTTTCCAA
>TU527140
AGTCTGTGCTGAGATTATGTGTGTGTGTGTGTCAGGCGGAGAGAAAATGAGAGGAAGAAACCCTGTGCACATACATGTGTTCAGTGACTTTCTCAGAAATTACAGTCAACTGCACAAAACATTAATTCTTGGAGCCAGTTTTAAACAGGGGCATCTATTGTCTTTGAGGGGCCACCAGTGGCAGTCCTGGCTCACTCGATACCCTAAGGCGAGATACGATATAAGCAAATGAATACACTTTTTAACAACTTAGTAACTCTTTACATATGTGCAAGGCTTGTATTTTCCAAATAAACTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000321_04274723_04276159.mRNA False 1341 mRNA 0.43 3 4273845 4276217
TU527140 True 298 lncRNA 0.41 1 4275928 4276225

Neighbor

gene id symbol gene type direction distance location
CI01000321_04223582_04224440 NA coding upstream 48334 4223582 ~ 4225511 (+)
CI01000321_04204706_04214819 IFFO1A coding upstream 58984 4204076 ~ 4214861 (+)
CI01000321_04188431_04194328 ING4 coding upstream 79460 4188431 ~ 4194385 (+)
CI01000321_04120043_04140867 CLCN1A coding upstream 132552 4120043 ~ 4141293 (+)
CI01000321_04082880_04096700 SLC2A3A coding upstream 176548 4082880 ~ 4097297 (+)
CI01000321_04299710_04300495 NA coding downstream 22641 4298858 ~ 4300521 (+)
CI01000321_04515562_04517953 MRPS21 coding downstream 239345 4515534 ~ 4518187 (+)
CI01000321_04524751_04530395 NA coding downstream 248534 4524751 ~ 4531478 (+)
CI01000321_04532761_04559105 NA coding downstream 256544 4532761 ~ 4559105 (+)
CI01000321_04567844_04592431 CELF3, CELF3A coding downstream 291627 4567844 ~ 4592571 (+)
G459187 NA non-coding upstream 16651 4256730 ~ 4257194 (+)
G459186 NA non-coding upstream 17243 4256286 ~ 4256602 (+)
G459185 NA non-coding upstream 20379 4253242 ~ 4253466 (+)
G459184 NA non-coding upstream 20979 4252590 ~ 4252866 (+)
G459183 NA non-coding upstream 22886 4250667 ~ 4250959 (+)
G459201 NA non-coding downstream 4816 4281033 ~ 4290003 (+)
G459202 NA non-coding downstream 6135 4282352 ~ 4283600 (+)
G459161 NA non-coding downstream 27369 4303586 ~ 4304968 (+)
G459218 NA non-coding downstream 48983 4325200 ~ 4325419 (+)
G459259 NA non-coding downstream 89340 4365557 ~ 4365758 (+)
CI01000321_04013470_04014515 CACNG8 other upstream 260179 4013468 ~ 4015412 (+)
CI01000321_03795430_03804685 SHISA7B, SHISA7 other upstream 470963 3792915 ~ 3805511 (+)
CI01000321_00815160_00819665 NA other upstream 3450998 815160 ~ 819749 (+)
G456774 NA other upstream 3846820 426083 ~ 427025 (+)
G459303 NA other downstream 209180 4485397 ~ 4488552 (+)
CI01000321_04748037_04748315 DPM3 other downstream 471195 4747650 ~ 4749579 (+)

Expression


Co-expression Network