CI01000321_04694693_04706830 (SNX27, SNX27A)


Basic Information

Item Value
gene id CI01000321_04694693_04706830
gene name SNX27, SNX27A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 4694565 ~ 4707157 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000321_04694693_04706830.mRNA
AACTTACCCTAGTAATATTCTAGCCTCTATCATCATATCAAACTTTTTATTATTTGCTATGGTAAAAACCCTAGTAATTGCAGCTTCTTCCATGCAACTGTCTTTCAGCTATGCCTTGTAAACGTACTGTTACAGGATATCCTCTTACATAATCCACCAAAACAAACTTGACAACATCCACAGAGGCCCTCCGGCCTACTCTAAAGACACTGGACACAGTCTGTGAAAGTGAAAGAAGTCTTGTGATGGTTGGGCGGGTCACGCGTATTTCTGGCTTGTTGTTTTGAAGGCCTCCGGGAGGAGAGGGGGTGAAAAAACGAATTAAAGATGGCGGAAAACGAAGGAGATGAGACTGCTCGGCCCGCTCCTCCGTCACTGCTACCCACAGCGCCCCGCGTTAACGGATCGGGGATGGTCGGTTCTGGTAGTCAAACCCCGACCTTGGTGACTTCAGGTCCGCGGGTGGTTCGGATCATAAAGTCAGAATCGGGATACGGATTCAACGTCCGCGGTCAAGTGAGTGAAGGCGGCCAGCTGCGGAGCATTAACGGGGAGCTGTACGCTCCTCTCCAGCATGTCAGCGCCGTGCTACCCGGTGGTGCGGCGGACCGGGCCGGTATCGTGAAAGGAGACCGAATACTAGAGGTTAACGGGGTGAGCGTGGAGGGGGCGACGCACAAGCAGGTGGTGGATCTGATCAGGGCCGGAGAGAGGGAGCTGGTGTTGACCGTGCTCTCCGTCCCGGCACAGGAAGGGGACGGACTTGATGTCGGTGAAGAAGGTGCGGTGCAGCCCAATTACGACTACAGTGACAAGCAGGCCGTCCCCATTTCAGTCCCCACATACAAACATGTGGAACAGCACTCAGAGAAGTTTGTGGTGTATAACGTGTACATGTCGGGCAGACAGATGTGCTCAAAGCGTTATCGGGAGTTCGCAATACTTCATCAGAACCTGAAGAGAGAGTTTTCCAACTACACTTTCCCAAAGCTGCCAGGGAAGTGGCCCTTTTCTCTGTCCGAACAACAGCTAGACGCTCGCAGGAGGGGATTGGAGGAATACCTGGAGAGAGCGACACTGTTTAACATGTGTTTCATGTTAAAGAACCACAACAGCATAACGGATGTCGAGTTAAGAATAGCGCTGCCTGATAAAACCACAGCTTCAGTAAGAGTCCGAAAGAATAGCACCACTGACCAGGTTTACCAGGCTCTTGTTGTGAAAGTTGGGATGGACAGCATCATGGCCAGTTACTTTGCTCTCTTCGAAGTTATTAACCACTCATTTGTGCGAAAATTGGCTCCTAATGAGTTTCCGCACAAGCTGTATGTTCAGAACTACACGTCAGCTGTCCCCGGGACGTGTCTCACAGTGCGTAAGTGGCTCTTCAGCACACAGGAAGAGGAACTGCTGCGGGACAACCCACTGGCCCTGCACTACTGCTTCCATCAGGCACAGGATGATGTGAAGAAGGGATTCATTAAAGCAGAGGATAAAGCATACCAGCTGCAAAAACTAGCAGAACAGAAAAAGATGACAACGTATCTGAGTCTTTTGCGCTCATGTGAGGGATATAACGAGGTGACTTTCCCTCACTGTGCATGTGACTCACGGCGGAAAGGTCATGTGATCACGGCCATCAGCATGAAGCATTTCAAACTACACGCCTGCACAGAGGACGGCAGTCTTGAGAATCAGGTGATTGTGTTCGAATGGTCAGAGATGCAAAGATGGGACACAGATGAGGAGGGTATGGCCTTCTGCTTTGAGTATGTGCGGGGAGAAAAGAAACCTCGCTGGGTCAAAATATTCACTCCTTATTTTAACTACATGCATGAGTGCTTTGAGAGGATTTTCTGTGAGCTCAAATGGAGGAAAGAGGTTGAAGAGGAGGCCTCAGACAAAGGCAATAAGAACTGTAGTAATAATGGTAAGAGAACCTTTTGCCCTCATTTTATCACACTTAAGTTAATGGGATTTTTCCAAGCATACTCATGTGATGGCTACACTCACACAGAAACCTGAAATACTGGTTCATACTTACCACACTTGCATTCAAGTATGAGTACAAAATCACATGTCATGCGTGTGATGCTCATTTGAGCAATCAGTGCATAAAATGAACCCTGCACCTTCTCGAAAGATCAAATAAT

Function

symbol description
snx27a Predicted to enable phosphatidylinositol binding activity. Predicted to be involved in intracellular protein transport. Predicted to act upstream of or within signal transduction. Predicted to be located in endosome and membrane. Predicted to be active in early endosome. Orthologous to human SNX27 (sorting nexin 27).
snx27 Enables phosphatidylinositol-3-phosphate binding activity. Involved in endocytic recycling and intracellular protein transport. Located in several cellular components, including early endosome; immunological synapse; and nucleoplasm. Colocalizes with WASH complex and retromer complex.

GO:

id name namespace
GO:0035091 phosphatidylinositol binding molecular_function

KEGG:

id description
K17936 SNX27; sorting nexin-27

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000321_04694693_04706830.mRNA True 2153 mRNA 0.49 11 4694565 4707157

Neighbor

gene id symbol gene type direction distance location
CI01000321_04514194_04514490 NA coding downstream 180075 4514044 ~ 4514490 (-)
CI01000321_04510676_04512993 CRABP2B, CRABP2 coding downstream 180997 4510361 ~ 4513568 (-)
CI01000321_04496126_04503083 SCAMP3 coding downstream 191482 4495451 ~ 4503083 (-)
CI01000321_04483181_04491284 NA coding downstream 203281 4483120 ~ 4491284 (-)
CI01000321_04444212_04473051 ASH1L coding downstream 221514 4444194 ~ 4473051 (-)
CI01000321_04710611_04711031 S100A10A coding upstream 3295 4710452 ~ 4711384 (-)
CI01000321_04767177_04772703 EFNA1A coding upstream 59805 4766962 ~ 4772703 (-)
CI01000321_04864287_04872091 EFNA3A, EFNA3 coding upstream 156788 4863945 ~ 4872091 (-)
CI01000321_04965389_04968595 NA coding upstream 256722 4963879 ~ 4969345 (-)
CI01000321_05078234_05124375 NA coding upstream 370735 5077892 ~ 5124437 (-)
G459598 NA non-coding downstream 51956 4642303 ~ 4642609 (-)
G459403 NA non-coding downstream 54450 4634865 ~ 4640115 (-)
G459447 NA non-coding downstream 62887 4629578 ~ 4631678 (-)
G459431 NA non-coding downstream 104097 4583022 ~ 4590468 (-)
G459580 NA non-coding downstream 130960 4563397 ~ 4563605 (-)
G459612 NA non-coding upstream 5117 4712274 ~ 4716814 (-)
G459645 NA non-coding upstream 91338 4798495 ~ 4798774 (-)
G459764 NA non-coding upstream 227462 4934619 ~ 4935681 (-)
G459807 NA non-coding upstream 322822 5029979 ~ 5030313 (-)
CI01000321_05151190_05175511 NA non-coding upstream 446300 5150311 ~ 5175511 (-)
G459011 NA other downstream 878170 3810127 ~ 3816395 (-)
CI01000321_03737149_03737996 TMEM238A other downstream 956580 3736456 ~ 3738096 (-)
G458957 NA other downstream 1027566 3661626 ~ 3666999 (-)
G458859 NA other downstream 1205031 3471881 ~ 3489534 (-)
G458802 NA other downstream 1602638 3088115 ~ 3091927 (-)
G459803 NA other upstream 311809 5018966 ~ 5025886 (-)

Expression


Co-expression Network