G456508


Basic Information

Item Value
gene id G456508
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 13869 ~ 14375 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU524046
CTTTCATTCAATTGTACATTAACAGCTGAATCTGTGTCAGATGTTGCACTACAAATAGCTGTCACTGAGAATACTTATTCCTGTGAATAAGTATGAAATGGATGTGTAGTTTGCATCAGTTCTAAGGTTTTCAAACATAGTTTTGAATGGCTTTGGATGGATCTTTGTGATCTCTCTTTGCTTCACCCATTGCTGCTGAGGTCCCGAGGAATTTTTATGGCAGTCTCTGGCCAACCTTAGGAAGTAGTCTCTAGATGGGTGAAGGGCAGAAACTGCATGTGGACCAATGAGAAGTCCTGTCCTTCCCAGGCTTGGTACAAGAGGTCTTCTTCTTGCCCTCTAAGAGAGGTCTGGATGTTGTCCTTACATCTTTATCTGATGGCGTTGGACAGTTTGTTTGTGTTAGTCCACCAAGATCCAATCAAAATGTAGCAAACCTTTGTCCGCTGTTACGGACAGAGAGGGGCCCGGCCATAAACTGGGCCCTGGAATGTGCTGTTCACTACA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU524046 True 507 lncRNA 0.44 1 13869 14375

Neighbor

gene id symbol gene type direction distance location
CI01000321_00098493_00100489 NA coding downstream 83921 98296 ~ 100586 (+)
CI01000321_00150756_00152124 NA coding downstream 136381 150756 ~ 152189 (+)
CI01000321_00283589_00284224 NA coding downstream 268949 283324 ~ 284337 (+)
CI01000321_00326486_00355049 NA coding downstream 312018 326393 ~ 355202 (+)
CI01000321_00441382_00448773 RPS18.L, GM10260, RPS18, RPS18-PS3, GM6630, BRAFLDRAFT_114927, GM11361, RPS18P5 coding downstream 427007 441382 ~ 448780 (+)
G456514 NA non-coding downstream 9902 24277 ~ 24488 (+)
G456525 NA non-coding downstream 19750 34125 ~ 35616 (+)
G456537 NA non-coding downstream 46489 60864 ~ 61095 (+)
G456539 NA non-coding downstream 47983 62358 ~ 62561 (+)
G456509 NA non-coding downstream 71383 85758 ~ 90935 (+)
G456774 NA other downstream 411708 426083 ~ 427025 (+)
CI01000321_00815160_00819665 NA other downstream 804089 815160 ~ 819749 (+)
CI01000321_03795430_03804685 SHISA7B, SHISA7 other downstream 3774943 3792915 ~ 3805511 (+)
CI01000321_04013470_04014515 CACNG8 other downstream 3992251 4013468 ~ 4015412 (+)
G459303 NA other downstream 4471022 4485397 ~ 4488552 (+)

Expression


Co-expression Network