G456509


Basic Information

Item Value
gene id G456509
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 85758 ~ 90935 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU524050
AAAATTTTTGCTTGCTGCCATTAATGGCTTTCTTTTGCAGAAAGCAACAAACATGCATAATCTTCACACACATTAAACAACAGTGTCTTCAATGTGGACATTGACTGATATTTGGATGGAAGCATTGTCCTGGGGACCCCCACCATTGCACATTTTGTATGTCTCCCTCACACACCCAATTCAAGTCTGCAGTCTGTACTAATGAACTAATTAGTTGGAATACTTTTAGGATACTTCTATGATTTTGTAACATATCAATCTATGGAAATTAAAGAGCAGTTTGAACAACTTTGAAACCAGTTTATGAAATGCAATGCAACTCAAGAAGCTGTCAGTGAAAAGCTGTGATGTTGCAGGTGTGCCATTAAACACTTTGTATTACATAATCTAGATAATGACAGTGAGCAGGGGGGAAGTAATGAGGGAATGAGGCAACAACATCCTGTTTAACTGCTAGCAAAGCACTTGTCTAACCAATGTGAAAACTACTGAAAAAGAACCACTATTGCTAACCACTACTGAAAGGACCTTGACCTCTGCAGTTCAGATGATTTTGAATAAAATATGAACTATAAGACCACATTTAGTTTAAAAGTGAGACCTCAGAACCCTGCTGGTGCAAACAACCTTAGGAGCTTGAGACATAAAGGAAACACTTGAAATAATCTGGAAAGAGAATTGGTAATAACGCATATGCGTGTGTGACTGTATGTTTGTGTGTGTGTATCCTTCTATTTGAGCGCCTTCACAACAGAGGAGTAGGCTACATGTATCTCCTCATCGCTGGGGCAAGTGGAGGAGAATTCCTCTCGGGCATATGCTGCATCCAGATATCGCCACAGAGATATCAGAGAGCGAGGGATGGAGAAACCTCGAAACTTCTGACACACAACTTGACAATGTGTAGCTTGGGCAGTAAGTTGCAGTCAGCCAGAGTGAGCTCCTGACCATCCAGGAAGGGGCGGGTGGAGGAAGTGACATCATCAGCACTGTTCTCATCGATCTCATCCGGTAGAGGAGAGTTCAGATAGTCATCCAACTTCTTCAGGGCCTTCAGTAAACCCTTCTCCAGATCTGCACAAAGAAACTTTATTTAAAAACATTTTCCTTTTCTGCATTGATGTATTTCCTATTGAAAGGGGGATTGTCCAATTTTAAATAGCAAATACACACAAAAACTTTCTTTTCTTTGTCCACAGTGGCCTGTTCACACAGCAAGAATGTTCGGCAAGAAAAACTGGCCCAATTTTTCACATGGGATTTGTCTCTTCAGACCAGTGTGGAAAATGCAATTTCAGTCTCTGACAGTAGGTAGCGCTTAAAAGCAGGAATACAGCAGAAAACAAGATGCTGATATACATTTTTTATATTATTTTCTTTTTGTCTCAGTATTTGATTTACTACTGATATTTGTATAATTTCCTTTAATTATGTTCATTGTTCATAATCTTGCAATAAAAAATGCTGCCCAACTATACATTTCTGACACCCACTTGTCACAGAGAAGAAAACAAAATCAAACAGCTTTTCAAACAGCTTTTCAGAATTTTTTTTCTTGCTTTGATGTTTATCAAACAACACCAAGTACAAAAGTACAGAGAAAGAGAGCTGGGTCTGGATACTTTCTCTGGTATTCACTGTCACATAAAATAAAATAGTCTGTTTGTGAGTACCACCAAGTCCATTATTATTGGTTGGCCAGTTTTCTTCACAGTACGATGAAAAAATTAGATTAGAACATTGCCGCGCTGATGGCATGTGAATGTTTGTATTGGTCTGAACAAACAGCAAACCTGCTGTTCATTAGGGCCAGAGCACCGATGGTGTGAGGACTCTATTGTAATTGCTCTGTCAATTCTTCTTCTTCTCCGAAATGAATCGCATTTTTGAGGGCCTAAACATGCTCGAAAACTCAAGAAACTTTGCACACGCATCAGAAGTGGTGAAAATTTACATCTGATATGGGTTTCAGAATTAGGTGTGGCAAAATGGCTCGATAGCGCCACCTACAAAATTTCAATTAAGCGGCCTTCGCACTACGTTTCAAGTACAATTATGAATTTCGGTAGACACATGTAACAGCCCAATACCTACAAAAAAGTCCCTGGGTGCAAAATCAGAAAACCCAACAGGAAGTGAGATATTTTGCATTTTCTCTGCAAAATTTTTGCAGTTTTTGCCATTTCCAGACATTACTTTAACAAACTCCTCCTAGAGATTTTTCCATGGTGACGCGTCATTGCTTGTCTCATAACATACCGCAGCGCTTTTGCATTTATTTCATTTTTCCTTTTTTTATTCAAAATATTCACAAATTTGTTAACTATAGCATGAAATATCTGATATTCCGATTGTCAAATATGTGCAAGTGGATGTGTTTTGCTGTTTAAACACTTTTATAACAATCACGTTAGTTGAGCTATGATGTTGAGCTACGCACGATGGGCACCGCCATGTTAGTTTGCGCCGCACAGAGAATCAGATCCGTTGGATTTACAACATGTGAATTCATCCACTTCTCCTGGGTTGTGGTGGCACGGGTGCAAGGGCCCTTTCATCGCTGCTTGCAGCTTTAATTCAAGTTAAAATGTTTATCACATTGAAATGTCGCACCAAACAATCGTCTTGGTATGAACAGGTCTTAACCAGGTGAAACATGACATGGTTCCAGCAACAAAGCAATTTGTTTGTCCACATTAAACACAAAAAATGGGGCATGATGAAACACAATCAATCAAAAAAAACCTCAAAACTCAGCCAATCAAACAGCAATAAGGTCAACCGCAAAAACTACTCAGTCCACGCATTTTCAGCACTGAAACTCACATACTGCGCATCTTTAGTAAATACCGACAATAGTTTTTAACACCAAAAGAGGGTTTGCGCTTAAATCTGGCTCTATGTGTCTAAAAACGTGAGACGCAGTGCTCAGGAATGGTTTAAAAAGTGCAAAGGAGAATGTGACACTGTGTCCTAACTACATGTGAGGCAACGCCGCGACACGTGATAAAAGGCATCTGAGTTTTTGTCCTAACCAGCTGCAATGGCAACACGCGACGATTCTATTTTAGAAACGGTTTCTATTTGTCTGCGACGTCGTAGTTGGAACAACAACACATGGCAACAAGTATGGCAATGATAAAGTGTCTAATGTGAGTTTGAATATCATTCTATGTTCCCAGCTTTTTAGCTGTAATGAAAACAACACTGGCTAATTCACCACAAATCTTGAAAATAAATAAATGAACGTTCAAACTGTCAACTCAATGTGAACAAGCAAGTGTATTCTATGACAAAGATTGTTTTAGTCACTCCGTATGTACTTTAAATAATTTTTATATGGTGTAATATTTATAAATTTTACTATGTAACGTACCCATTTCATTGTGTCTGCTGTGGGCTTCTTAAGAGAGCCCGCCCTCACGCTCTTCTGATTGGCTGTGGTTTTTGATTGATTTTGTCGCGTCTCATAGTCGCGTCGCATCTGGTGTGGACAGACAAACTGCTTGTCGCTAGAATCTTGTCGCGTGTAGAGATGTGATGCAATAACGGAAATAACAGAAATAGCCAAACAGCAGAATAGATAGCTACTATTTTTGACATGGAAAAATAAAATAATCGCACTTGGCTATCCGGACACAGCCACTATGAGTTCTTCTTTTGCCATGCAGCCTTCAAATACAACAGGTGCCATGTCAACTTCTGTAAACAAAAGCTTGCAACGCTTACCCCGCCTCCGCGGTCATCTGATTGGTCCACTGTTATGGAACTGACATTGATGAGTGGCGCTGTGTGTAAAAGTTTAAATTATTTTAACTTGACATGGCATTTTAAAAACGTGGCACTCATGTGAGAAAGAAGCAAGACGCGAGTGCAACAGTCATACACATCCGTCTAGCACAGTGGTTTTCAAACCTATCCTGCAGGCACCCCAGCCCTGCACAATTTGTATGTCTCCCTTATCAGACACACCCAATTTAGTTCTTGCAGTCTCTACTAACGAGCTGATGAGTTGAATCAGGTAAATGAGGGAGACACACAAAATGTGCAGGGATGGGGTGCCTCCAGGACAGGTTTGAAAACCACTGCGCTAGCGCATGTTTACATGGAAACAATGGAAACATGCGCTAACAAAACAATGTTTTCTGTAATCCAGGAACATTAGATTTGGATTAAGTTTGACAGACAAAATGAAACAATACTGTCTGTTTACAGCTGGTCAGTTGGTTGTGAGTCTCACATCTGAAACTTAAAGTCCCCCTGAAATCAAAATTTAAGTTTTTTTAGCTTTTAGTATGAATATGTTAGCCTTAATGTTATGAGTAAGCTGGTGTGCTCCAAAACAATGACAAAATTTGCATTTAGGAGATATGAGCATTCAAAACGTACAGTCTCTCACTTCCACTAAAATGGATCACGGATTTTCTTGACATCACATCGCACTTCAGCTTCTCATCAAATCTTCTGTCCAATCAAATGGTGTACATGGTGAATGGCACATAGTGCACTATATAGAGAATAGGGAACGATTCAGACAGTGTAAATATGATTTCCATTGATGCAAATGAAGTCTGTTTTCGCGTTAGTATAACGTGAACCACTACAGCGCGAGCAGTCTGCTCTGGCCCAGGGACACGAGAGCACAGAGCGGATCATATCCATGAGTCGGCTCAGATTACGAAAGGTAACTTATCGGACCCAATTAAATTCCGCACAGAATGCTATATTGTTATATATATAAGTGATATAGAGGAGATTAGGAGGATAAACGGTTAGATATTAAAAGGAAACAGAGGTTTTACTGAGTTTAACAGCTCTGGCCGAGCTGTGATATAAAAGTAACACTATTGGCTTTTTTAAAAAAGGGGCAGGGCTGTTCCTGTTTCAGTTGAAATTACGTCAACACATTGAATAATGCTGCACGTTCCAAGACACCTCAGTGGGCCTTTAATAATGGGCATCTTTTTAACAAATGAATGAAAACAAATAGCAGCATTCTTGCACTCACTGTCATTCATCTGAGGGTTTGAATTCTTAATGTAGGCTGAAAACTTTGAGAACACATCAAGACCAGCAGTGTTAGATTCAGGATTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU524050 True 5095 lncRNA 0.40 2 85758 90935

Neighbor

gene id symbol gene type direction distance location
CI01000321_00098493_00100489 NA coding downstream 7361 98296 ~ 100586 (+)
CI01000321_00150756_00152124 NA coding downstream 59821 150756 ~ 152189 (+)
CI01000321_00283589_00284224 NA coding downstream 192389 283324 ~ 284337 (+)
CI01000321_00326486_00355049 NA coding downstream 235458 326393 ~ 355202 (+)
CI01000321_00441382_00448773 RPS18.L, GM10260, RPS18, RPS18-PS3, GM6630, BRAFLDRAFT_114927, GM11361, RPS18P5 coding downstream 350447 441382 ~ 448780 (+)
G456539 NA non-coding upstream 23197 62358 ~ 62561 (+)
G456537 NA non-coding upstream 24663 60864 ~ 61095 (+)
G456525 NA non-coding upstream 50142 34125 ~ 35616 (+)
G456514 NA non-coding upstream 61270 24277 ~ 24488 (+)
G456508 NA non-coding upstream 71383 13869 ~ 14375 (+)
G456510 NA non-coding downstream 15018 105953 ~ 125908 (+)
G456573 NA non-coding downstream 44580 135515 ~ 135725 (+)
G456582 NA non-coding downstream 85448 176383 ~ 176794 (+)
G456583 NA non-coding downstream 86861 177796 ~ 178392 (+)
G456588 NA non-coding downstream 94697 185632 ~ 186342 (+)
G456774 NA other downstream 335148 426083 ~ 427025 (+)
CI01000321_00815160_00819665 NA other downstream 727529 815160 ~ 819749 (+)
CI01000321_03795430_03804685 SHISA7B, SHISA7 other downstream 3698383 3792915 ~ 3805511 (+)
CI01000321_04013470_04014515 CACNG8 other downstream 3915691 4013468 ~ 4015412 (+)
G459303 NA other downstream 4394462 4485397 ~ 4488552 (+)

Expression


Co-expression Network