G456588


Basic Information

Item Value
gene id G456588
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 185632 ~ 186342 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU524132
GGCCAACAGTGCTTTGTTACAATTCAGGTTGCTATCATAAGTCCAATAGGATCGCAACATTAAAAGTATTTATTTCAGTTCCATCCAATTGAGGATCGTATTCATCACGCCGGTATGGACGGTTGTTGAGGAACTGTGTCGTGGCTGTCGTGTCGATGAGGCCTTCACAGGGGATGATCTAGTTGACTCAATCTCTGCTGATACTTCAGGGCTGCGTTGTGGTCGTGTCAAGGTGCAGGTCCTTGGTCTCACCTGGATACGGCCCGGATCCGGTTGACTACGGTGAACCTCGGGATAAACAGAAAGACTAATATTAGCGTAGATGCCATTCTTCTTCTGATGTAACGAGTACATCAGGTGTTATAGGAAGTGTTCCCGGTTCCGGCTGACCTAATTTATGCAGCCTAATAATCCTTTAACGGATTTGGAAATATAAATTGGTAATGTGTTATGTGTATGCCAGGTTAAAGAGATGCGTTTTTAGTCTAGATTTAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU524132 True 496 lncRNA 0.44 2 185632 186342

Neighbor

gene id symbol gene type direction distance location
CI01000321_00150756_00152124 NA coding upstream 33443 150756 ~ 152189 (+)
CI01000321_00098493_00100489 NA coding upstream 85046 98296 ~ 100586 (+)
CI01000321_00283589_00284224 NA coding downstream 96982 283324 ~ 284337 (+)
CI01000321_00326486_00355049 NA coding downstream 140051 326393 ~ 355202 (+)
CI01000321_00441382_00448773 RPS18.L, GM10260, RPS18, RPS18-PS3, GM6630, BRAFLDRAFT_114927, GM11361, RPS18P5 coding downstream 255040 441382 ~ 448780 (+)
CI01000321_00511077_00516356 NA coding downstream 324212 510554 ~ 516356 (+)
CI01000321_00549095_00550611 NA coding downstream 362753 549095 ~ 550648 (+)
G456583 NA non-coding upstream 7240 177796 ~ 178392 (+)
G456582 NA non-coding upstream 8838 176383 ~ 176794 (+)
G456573 NA non-coding upstream 49907 135515 ~ 135725 (+)
G456510 NA non-coding upstream 59724 105953 ~ 125908 (+)
G456509 NA non-coding upstream 94697 85758 ~ 90935 (+)
G456589 NA non-coding downstream 7885 194227 ~ 194486 (+)
G456689 NA non-coding downstream 76540 262882 ~ 263253 (+)
G456691 NA non-coding downstream 77241 263583 ~ 263835 (+)
G456711 NA non-coding downstream 115451 301793 ~ 302070 (+)
G456725 NA non-coding downstream 119624 305966 ~ 306223 (+)
G456774 NA other downstream 239741 426083 ~ 427025 (+)
CI01000321_00815160_00819665 NA other downstream 632122 815160 ~ 819749 (+)
CI01000321_03795430_03804685 SHISA7B, SHISA7 other downstream 3602976 3792915 ~ 3805511 (+)
CI01000321_04013470_04014515 CACNG8 other downstream 3820284 4013468 ~ 4015412 (+)
G459303 NA other downstream 4299055 4485397 ~ 4488552 (+)

Expression


Co-expression Network