G456774


Basic Information

Item Value
gene id G456774
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 426083 ~ 427025 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU524336
TGAAAAAAGTCCCATGAAATCCTGGTGGGATTGCTCATTACCATTTTTTTAGTTGTTGTTGTTGTATCTTATGCCAGATAGCTAAGAAAAGTAATAGTGCATCAATCTGAAGTATTATTCATGTCCATAGCACAGACAATGCTGGAAGAGCTTGCTAAAGTTTAATTCTTAGGATTAGGTTTGTTGAAATCAAGTATTTGCAGCATTAACTACAAAATGTGGTATAAAGCACTTGTGTCTCACTCTGGAGTCTCCTCTTTGAGCGGCGTGTGGGATCAGTATGGGCCCCTCCAGCTCTGCAGGGCTCAGTACTTCTCCCCTCTGGCCAAGAGTAAAAATAGTGTTCCTACTCTTGAGAGAAGGCTTGGAGAAAAAACCTTTTTTGGCTGTGTCCTCTACTCCCATCAGATCATCCTTGTCTGCAACGTCTTCATACTGGCAAAAGAAAGAGAAGAGAGAGAAAGAATGAAAACAAGACAAATTGAGAAATACATTTTAGCAGTAAGGATTAGGTTCATGCCAAGCACAATATAGCACAGTCTTGAGTGTGTCTTTGCTTTTATACATTATATTTATTAGTGTTGTCCAAAATATCGATATTTTGATATGTATCGATACTGAAATATCTGAAACCCCTATCCAATATCACGTTTCTGCTGTAACGATACACCAATATCAGCTGCGCATTCTCACTCTTTTTCCTCTCCAACAGCGAGTTGACACACACCCTCCTCATTCACTCGTCTCATTCAATCTGGTTGAATATTTTTGTATAGCGCATAATTTTAGTCATTCCCG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU524336 True 798 TUCP 0.39 2 426083 427025

Neighbor

gene id symbol gene type direction distance location
CI01000321_00326486_00355049 NA coding upstream 70881 326393 ~ 355202 (+)
CI01000321_00283589_00284224 NA coding upstream 141746 283324 ~ 284337 (+)
CI01000321_00150756_00152124 NA coding upstream 273894 150756 ~ 152189 (+)
CI01000321_00098493_00100489 NA coding upstream 325497 98296 ~ 100586 (+)
CI01000321_00441382_00448773 RPS18.L, GM10260, RPS18, RPS18-PS3, GM6630, BRAFLDRAFT_114927, GM11361, RPS18P5 coding downstream 14357 441382 ~ 448780 (+)
CI01000321_00511077_00516356 NA coding downstream 83529 510554 ~ 516356 (+)
CI01000321_00549095_00550611 NA coding downstream 122070 549095 ~ 550648 (+)
CI01000321_00559268_00567811 NA coding downstream 132243 559268 ~ 568138 (+)
CI01000321_00649226_00658653 NA coding downstream 222201 649226 ~ 658950 (+)
G456775 NA non-coding upstream 22318 403372 ~ 403765 (+)
G456782 NA non-coding upstream 29779 396042 ~ 396304 (+)
G456780 NA non-coding upstream 33667 392192 ~ 392416 (+)
G456763 NA non-coding upstream 87582 338275 ~ 338501 (+)
G456760 NA non-coding upstream 91090 334783 ~ 334993 (+)
G456791 NA non-coding downstream 58531 485556 ~ 485862 (+)
G456793 NA non-coding downstream 59778 486803 ~ 487488 (+)
G456795 NA non-coding downstream 60932 487957 ~ 488309 (+)
G456798 NA non-coding downstream 66315 493340 ~ 493807 (+)
G456800 NA non-coding downstream 68210 495235 ~ 495481 (+)
CI01000321_00815160_00819665 NA other downstream 391439 815160 ~ 819749 (+)
CI01000321_03795430_03804685 SHISA7B, SHISA7 other downstream 3362293 3792915 ~ 3805511 (+)
CI01000321_04013470_04014515 CACNG8 other downstream 3579601 4013468 ~ 4015412 (+)
G459303 NA other downstream 4058372 4485397 ~ 4488552 (+)
CI01000321_04515562_04517953 MRPS21 other downstream 4088509 4515534 ~ 4518187 (+)

Expression


Co-expression Network