G456793


Basic Information

Item Value
gene id G456793
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 486803 ~ 487488 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU524355
AAAAAGTGCTTTGACTGAGTACACCGCTCGTTGGCGATGTGGTAGGTCCCAGGCGTTGTTTGAATAGTAAACTATCTTTGCTACTAGACTCGCTATAGGGTAGTAGGCCCTAACAGGCCTCCTCTCACAGTGAGTTCCCACCATGTTGGGCCCCTAGCAGCCAGCACATGCGCTGTCAGGTAGCTGGCCTTAACAGGCCTCCCTGTTAGCAGCCCCAGTAAATGGGTTTTCTGGTAGCTATTTCTTATGCTGTCAGATAGTAAGCCTTAGCAGGCTTCTCTGTGGTCAGCCCTATTAGTGTGGATGTTGTAGCAACAAGACACGCTCCGGGTAGCTGGCCTTAACAGGCCTCCCTGTGAGTCCCCAGCACTTTGGTATGTGAAAGCTCAGCTAGCAATGATTTGCTTTTAAATAAGTAGGCCTTAAGAGGCCTCTCTGTGAGCAAGCTTTGTGCGGGTATTTTTTAGAATGGTCTAGCCACTTAAAAACTGGCTACCAGGCAGCTGGCCTTGATGGGCCGCCCTGTAGGCTAGTCCCCGGCAGTAGTGGACTTGCTTCAGATTGCAGGCCTTAGCAGGCCTCTCTGAGGATGAGTCCCCAGCAGTGTGGGCATCTGGCATCCAGCTGTTGCTTGTTTCCAGTTTGTTGGCCTTAGCAGGCCGCTCTGGAAGACAGCAGGCCTCCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU524355 True 686 lncRNA 0.52 1 486803 487488

Neighbor

gene id symbol gene type direction distance location
CI01000321_00441382_00448773 RPS18.L, GM10260, RPS18, RPS18-PS3, GM6630, BRAFLDRAFT_114927, GM11361, RPS18P5 coding upstream 38023 441382 ~ 448780 (+)
CI01000321_00326486_00355049 NA coding upstream 131601 326393 ~ 355202 (+)
CI01000321_00283589_00284224 NA coding upstream 202466 283324 ~ 284337 (+)
CI01000321_00150756_00152124 NA coding upstream 334614 150756 ~ 152189 (+)
CI01000321_00098493_00100489 NA coding upstream 386217 98296 ~ 100586 (+)
CI01000321_00511077_00516356 NA coding downstream 23066 510554 ~ 516356 (+)
CI01000321_00549095_00550611 NA coding downstream 61607 549095 ~ 550648 (+)
CI01000321_00559268_00567811 NA coding downstream 71780 559268 ~ 568138 (+)
CI01000321_00649226_00658653 NA coding downstream 161738 649226 ~ 658950 (+)
CI01000321_00697882_00700283 CCK coding downstream 209578 697066 ~ 700313 (+)
G456791 NA non-coding upstream 941 485556 ~ 485862 (+)
G456775 NA non-coding upstream 83038 403372 ~ 403765 (+)
G456782 NA non-coding upstream 90499 396042 ~ 396304 (+)
G456780 NA non-coding upstream 94387 392192 ~ 392416 (+)
G456763 NA non-coding upstream 148302 338275 ~ 338501 (+)
G456795 NA non-coding downstream 469 487957 ~ 488309 (+)
G456798 NA non-coding downstream 5852 493340 ~ 493807 (+)
G456800 NA non-coding downstream 7747 495235 ~ 495481 (+)
G456805 NA non-coding downstream 46942 534430 ~ 539694 (+)
G456806 NA non-coding downstream 57356 544844 ~ 545111 (+)
G456774 NA other upstream 59778 426083 ~ 427025 (+)
CI01000321_00815160_00819665 NA other downstream 330976 815160 ~ 819749 (+)
CI01000321_03795430_03804685 SHISA7B, SHISA7 other downstream 3301830 3792915 ~ 3805511 (+)
CI01000321_04013470_04014515 CACNG8 other downstream 3519138 4013468 ~ 4015412 (+)
G459303 NA other downstream 3997909 4485397 ~ 4488552 (+)
CI01000321_04515562_04517953 MRPS21 other downstream 4028046 4515534 ~ 4518187 (+)

Expression


Co-expression Network