G456798


Basic Information

Item Value
gene id G456798
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 493340 ~ 493807 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU524360
CCCTTTCAAAAGCTACTCTCAGTGCTGCGCTAAGCACTATGGGAATGCATCTTTGTATGACCAGCTGTGAATAATGTGTGTAAAGGCAGGAACACACCAAGCCGACAAACTAGTGGTGACGAAAGCAGACTGCGGGGTTGGCTCACGTCGGCAGTGTCTGGGTCCAAAGTTGGCCTGACATACCAAACCAACGCTCGACAGCCAACAGCCAAGTAGCACGTCCATTCTGCGCCTGCGTAAGATGAAATGCCTTTCCGTACCAGCAGGTGGCAGTAGCTGAACAGCCAATCAGAATGATCAGATGGCCCGACGGACCAACGAGCTCCGACGCCAATTCAACATGTCGAATCGGCCGAAAAAAAGCCGACAAGGACCAACTTCAGCCGATGGTGCAAAACACACTGAGAAAACTTAGTCGGCCAACGAACAAAAACTGCCCGACAGCCGACTGTCGGCTTGGTGTGTTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU524360 True 468 lncRNA 0.52 1 493340 493807

Neighbor

gene id symbol gene type direction distance location
CI01000321_00441382_00448773 RPS18.L, GM10260, RPS18, RPS18-PS3, GM6630, BRAFLDRAFT_114927, GM11361, RPS18P5 coding upstream 44560 441382 ~ 448780 (+)
CI01000321_00326486_00355049 NA coding upstream 138138 326393 ~ 355202 (+)
CI01000321_00283589_00284224 NA coding upstream 209003 283324 ~ 284337 (+)
CI01000321_00150756_00152124 NA coding upstream 341151 150756 ~ 152189 (+)
CI01000321_00098493_00100489 NA coding upstream 392754 98296 ~ 100586 (+)
CI01000321_00511077_00516356 NA coding downstream 16747 510554 ~ 516356 (+)
CI01000321_00549095_00550611 NA coding downstream 55288 549095 ~ 550648 (+)
CI01000321_00559268_00567811 NA coding downstream 65461 559268 ~ 568138 (+)
CI01000321_00649226_00658653 NA coding downstream 155419 649226 ~ 658950 (+)
CI01000321_00697882_00700283 CCK coding downstream 203259 697066 ~ 700313 (+)
G456795 NA non-coding upstream 5031 487957 ~ 488309 (+)
G456793 NA non-coding upstream 5852 486803 ~ 487488 (+)
G456791 NA non-coding upstream 7478 485556 ~ 485862 (+)
G456775 NA non-coding upstream 89575 403372 ~ 403765 (+)
G456782 NA non-coding upstream 97036 396042 ~ 396304 (+)
G456800 NA non-coding downstream 1428 495235 ~ 495481 (+)
G456805 NA non-coding downstream 40623 534430 ~ 539694 (+)
G456806 NA non-coding downstream 51037 544844 ~ 545111 (+)
G456842 NA non-coding downstream 138917 632724 ~ 633919 (+)
G456867 NA non-coding downstream 222892 716699 ~ 718214 (+)
G456774 NA other upstream 66315 426083 ~ 427025 (+)
CI01000321_00815160_00819665 NA other downstream 324657 815160 ~ 819749 (+)
CI01000321_03795430_03804685 SHISA7B, SHISA7 other downstream 3295511 3792915 ~ 3805511 (+)
CI01000321_04013470_04014515 CACNG8 other downstream 3512819 4013468 ~ 4015412 (+)
G459303 NA other downstream 3991590 4485397 ~ 4488552 (+)
CI01000321_04515562_04517953 MRPS21 other downstream 4021727 4515534 ~ 4518187 (+)

Expression


Co-expression Network