G456892


Basic Information

Item Value
gene id G456892
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 880225 ~ 882441 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU524467
ACAGTGCAAGAGAATGTAAGAGAATTTTTTTACAGAGGTAAAAGTCATGAGAAACAGCCATGGTCGAATATTACTCTTTTGGAGTCGACTCCCCATCACTGGTGTTCTCAATCGAGAAGCCGTTTCAATCAGATATATGTCAGAATAGGGAAGAAAAGATTATTACAATTTCCATTTCATGCTGGTGAAAAAATTCTGTCTGATCATCACATACAATTTCTTTCAGACAAGTTATGTAAAAAGCAGGGCTGAATAAAATGCAGATTCACTCTCTGACATTATGTGACGATCATATGATATACACAAAGGAATTCTGACCCCCACTTGTCACAGAAAAGAAGTCAAACAGTATTTACATGTTTTCAAACAGCCATTCAGATTTTTGTATTTACTATGATATTTCACCAAATACAAGAATACAGAGACGAGAGACGGTTTCAGATTGTTCATCTGTAATTCACTGTCACTTAGTAGTAGTAATAGTCTGTTCATGAGCACCACAAAGTTATAGTTTTATGTAACAGCAGCAGCTCTGGGCATGTGACCAAAAGTTCAAATCTTATTGGTAGGCCAGTTTCTTTGCAGTGCGATGAAAAAGAAATTTGAATACCTTTCCGTAAAAAATTTACGGAAATTTAAATAAATTTATGTCAGTCTGAACAGACATATTAACAGCTATTCATTCAAATTAAAAGGTTTATCGCATCAAATCTTCGCACCAAACATTTATGTCGACGTGAACAGGCCTTTATACTGGCCTGTTATATATTGCTGTGAATATAGGATTACACAAAAGCAAAGGTTTGTGGTCACTGATGCCAATTTAGAAACAATCTATTTGCATTCAGCCATGATTCATTTGTTCCATAAGTGAAAGAGTCTGATAACAGGGGAGTTACCAAGGTGAATAGTATTCAGCTGGTTATGTGATCACAACATGGCCGCCCTCATGAGGCGACCCACCCTCCTGTGAGATGATTTTAAACATTTTTTAAAATTACTGTTAATTATGTATAAAAGGTTTTAATGTGGTAGAAATCACTGAGTGCACCTTTAACATGACAGTGGGATAGATTCCCTTCACTGCAACCAAACCAGTCTGCAAGAACCTTTTGATCTACCATAACCTACTCTGTGTAAATAGAAGAAAAGCCGAAAACTGTGGACAGTCTTCCTTTAGATTCAGATGGCAGGCTGATTCCAACTTGCATTTGTTCATTAGTGCTGTCTTTCTTTTTTTTTATTTCTTTTCTTTTTTTTCTTTTTTTGCTAGATATTATTATTTTTGGTGGACCTGCTATACAAGGGCTATATAGTCCAATATAGCATAATATTCTAATACGTAATAGTTTAGGAGGCAAGTGATTATCAGTTTTTGGCCAGTGCATGACCAATGCTCAGTTAGTAAACACTGTTAGTCCTCTATAATCCGAAGTGCAACCATTTAATTGCTTTATTTAATTTACCTACAAATTTGGAGTTTGGAGTCGGTAGATTTTAAAGTTTGTTTTTTTTTGTTTTTATTTCAAAATGTAATTTATTCCTGTGATAGCAAAGCTGAATTTTCTGCAGCAATTACTTCAGTTTTCAGTGTCACATGATCCCTCAGAAATCCTTCTAATATGCGGATTTGGTGAATAGAAATTTCAAAAGAACAGTATTAAATTTAAATAGAAATCTTTTGTAATATTTTGAATGTCTTTACTGTCACTTTTGATCAATTTAATACGTCCTTGCTAAATAAAAGTAAAAAAATAAATAAAAAAATCTCACCGACCCCAAACTTTTGAACTGTAGTGTATTTATTTTTTAACTTATTTTTGATGTGAGGCCTTTACGACTTACAAATGTTACATACAATTAAGTGTATTGTATATAGCTCTATAAACGAATGAATATTTATTGGAAAGCATGTGGAATGGACTCAATTCTGTGAATACAGTATTTAGGGATTATTTGTTTTTGTTCTTTTCTACAGGTTTCTTGACATTGGTTTTACAGAGTTTCTTAATCTAACATAATAAAGTCCCTTTCAGATGTTTGAAATTAGGTGTGTAATTCTGGTGTTGTATTAGACACATTTCTCTTTTCCTTTTACGCTTTCCTTTTTTTTTTTTTCTTCCTTCTGTTTGGAGTGTGTGTGTGTGTGTGTATGTTTGCTTACTACAGCAGCCAGGATTGTATTTTGCATGTTGCCAATAAAAAATGTTTTTCCCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU524467 True 2217 lncRNA 0.34 1 880225 882441

Neighbor

gene id symbol gene type direction distance location
CI01000321_00844476_00879488 CPNE4A, CPNE4B, CPNE4 coding upstream 532 844294 ~ 879693 (+)
CI01000321_00815160_00819665 NA coding upstream 60476 815160 ~ 819749 (+)
CI01000321_00785868_00790038 CTNNB1, CTNNB2 coding upstream 89216 785868 ~ 791009 (+)
CI01000321_00697882_00700283 CCK coding upstream 179912 697066 ~ 700313 (+)
CI01000321_00649226_00658653 NA coding upstream 221275 649226 ~ 658950 (+)
CI01000321_00887320_00899893 MRPL3 coding downstream 4879 887320 ~ 900122 (+)
CI01000321_00909867_00919491 NA coding downstream 26997 909438 ~ 920478 (+)
CI01000321_00981761_00983302 NA coding downstream 99060 981501 ~ 983955 (+)
CI01000321_00986344_00991651 NA coding downstream 103903 986344 ~ 992510 (+)
CI01000321_00994911_00997021 ASTE1 coding downstream 112470 994911 ~ 997093 (+)
G456912 NA non-coding upstream 77837 802160 ~ 802388 (+)
G456911 NA non-coding upstream 78346 801660 ~ 801879 (+)
G456868 NA non-coding upstream 143744 735187 ~ 736481 (+)
G456867 NA non-coding upstream 162011 716699 ~ 718214 (+)
G456842 NA non-coding upstream 246306 632724 ~ 633919 (+)
G456926 NA non-coding downstream 942 883383 ~ 883820 (+)
G456928 NA non-coding downstream 3050 885491 ~ 885815 (+)
G456929 NA non-coding downstream 4034 886475 ~ 886724 (+)
G456930 NA non-coding downstream 20921 903362 ~ 903598 (+)
G456931 NA non-coding downstream 24725 907166 ~ 907405 (+)
G456774 NA other upstream 453200 426083 ~ 427025 (+)
CI01000321_03795430_03804685 SHISA7B, SHISA7 other downstream 2906877 3792915 ~ 3805511 (+)
CI01000321_04013470_04014515 CACNG8 other downstream 3124185 4013468 ~ 4015412 (+)
G459303 NA other downstream 3602956 4485397 ~ 4488552 (+)
CI01000321_04515562_04517953 MRPS21 other downstream 3633093 4515534 ~ 4518187 (+)
CI01000321_04748037_04748315 DPM3 other downstream 3864971 4747650 ~ 4749579 (+)

Expression


Co-expression Network