Gene
RNA
| Item | Value |
|---|---|
| gene id | G458081 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000321 |
| NCBI id | null |
| chromosome length | 5206101 |
| location | 883271 ~ 883804 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU525860 | False | 418 | lncRNA | 0.30 | 1 | 883271 | 883688 |
| TU525861 | False | 534 | lncRNA | 0.32 | 1 | 883271 | 883804 |
| TU525858 | False | 313 | lncRNA | 0.35 | 1 | 883376 | 883688 |
| TU525859 | True | 429 | lncRNA | 0.36 | 1 | 883376 | 883804 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000321_00822740_00840482 | DYNC1LI1 | coding | downstream | 42789 | 822456 ~ 840482 (-) |
| CI01000321_00737310_00746720 | CFAP44 | coding | downstream | 136551 | 737209 ~ 746720 (-) |
| CI01000321_00734872_00735353 | NA | coding | downstream | 147918 | 733987 ~ 735353 (-) |
| CI01000321_00706327_00720512 | TRAK1 | coding | downstream | 162652 | 705780 ~ 720619 (-) |
| CI01000321_00451198_00505835 | NA | coding | downstream | 376864 | 450361 ~ 506407 (-) |
| CI01000321_00922020_00945388 | NA | coding | upstream | 37697 | 921501 ~ 945388 (-) |
| CI01000321_00962639_00981042 | SMARCC1, SMARCC1A | coding | upstream | 78426 | 962230 ~ 981219 (-) |
| CI01000321_01019890_01027358 | NA | coding | upstream | 135940 | 1019744 ~ 1027358 (-) |
| CI01000321_01057908_01060166 | NA | coding | upstream | 173926 | 1057730 ~ 1060497 (-) |
| CI01000321_01090482_01118656 | TAX1BP1A | coding | upstream | 205184 | 1088988 ~ 1118690 (-) |
| G458076 | NA | non-coding | downstream | 12075 | 870866 ~ 871196 (-) |
| G458074 | NA | non-coding | downstream | 14832 | 864618 ~ 868439 (-) |
| G458052 | NA | non-coding | downstream | 66135 | 816787 ~ 817136 (-) |
| G458050 | NA | non-coding | downstream | 67850 | 814954 ~ 815421 (-) |
| G458043 | NA | non-coding | downstream | 86008 | 797053 ~ 797263 (-) |
| G458059 | NA | non-coding | upstream | 2992 | 886796 ~ 900107 (-) |
| G458064 | NA | non-coding | upstream | 113015 | 996819 ~ 1000896 (-) |
| G458126 | NA | non-coding | upstream | 162642 | 1046446 ~ 1046664 (-) |
| G458128 | NA | non-coding | upstream | 179866 | 1063670 ~ 1064011 (-) |
| G458129 | NA | non-coding | upstream | 182398 | 1066202 ~ 1066558 (-) |
| G456607 | NA | other | downstream | 784076 | 96116 ~ 99195 (-) |
| G456609 | NA | other | downstream | 843331 | 39518 ~ 39940 (-) |
| G456597 | NA | other | downstream | 855998 | 25639 ~ 27273 (-) |
| G458122 | NA | other | upstream | 148259 | 1032063 ~ 1036148 (-) |
| CI01000321_01451689_01453423 | NPY | other | upstream | 567390 | 1451194 ~ 1453530 (-) |
| CI01000321_02282824_02284376 | MBPA | other | upstream | 1389241 | 2282238 ~ 2284934 (-) |
| CI01000321_03044953_03048124 | NA | other | upstream | 2104336 | 3044880 ~ 3048203 (-) |
| G458802 | NA | other | upstream | 2204311 | 3088115 ~ 3091927 (-) |
