G458122


Basic Information

Item Value
gene id G458122
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 1032063 ~ 1036148 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU525908
GGAGGTGGAATCTCAGGTACTCTTGTAAACTGCGACGGCACTATAAAGTCTTTCACGTAAGTTCAGATTTTGCGTGGTATATTAAGAACCTCCTTTAGGTGATGTTGGGCAAAGGATGATGTTACGCTTTCTCAGAGACAAAAAGATATCCTTTCAGTCGAGTTATGTGCAAAACTGCGTCTCAGTGATTGAAGTCTTCGGATACGTGGGAGAGAAAGATGATTTTCACGCACCGTGATTTCTTCTGAGGATTCAGCGTCTCTGTTGTTTCAACACACCTTTCATTTAGAGGAACCTCGGGCTGCGTTTATCTTGTTCTCATCATTTTTTGTCCAGTTCTAACAATGACGGAGAAAACAGCTCCCTGGTGGAGGTCTTTCGTGGGCAAGAGGAGAAAAGCAGCCAGAGAATCGGCAGCGAATCTGGAACAGGACCTCCGTAATCAGGCTTCAGCAGAGTCCACACAGCATCATCCCTCCGCTGAGCCGGACCAACAGCTCACTTCACCGACACGTCCAGCGAAAGAAGCAGACAACTGCTTACCGAGCGACGAAACGTATGACGACTCTGCTGTTCAGCCAACTTTCAACGAGCGCTCCAATCGCCGTAATCTCCTTGTGTCCCGCTCCGGTCGCTTCAAAGAGAAACGGAAGACGCGCACGAGTCTACTACAGAACCACGAAGATGATGGGAAACCTGCCGCTGCCAAATCAACCGACGTTCAGTCAACGCACTGACTGCAAATTAGGTTTACATCCGATGGTAGAGCACTATATAGGCTACGGCACTACCTCCAGACTGACACTGTTGAAAATTTGACTTATGAATGCACTTATGACGTTAAGGGTATAAACTCTTGGAGTAGCCCGAGTTATCCATATCACAGGAGCTTTTTTTTCCAAATGCTGGAAATAATGACATTTTCCTGCTGGAAAACACTACATACTTTGTCTCTTAGCCTAGTCAGGCTTGTCATTTTGCAGGGTTTAAAGGGTTTTTGGGCACTACTGGTCTAGCTGGCTGACTAAGTCCAGCTAGGCCGGTCTGGGAGACTAGCTAGACCAGTCTAAACCTGCTAAGACCAGCAAACCATAAGCTGTTTTTTTCCCCCAGCAGGGTGTTCAGTAGAATCTTTTTTGTTTTGTTTTGTGAAGGATACAATGTAATTTTGTCAAATAATTGCACTGTTTTGTGGTGTTACTGCAATATTTTATGAAGGACTTTACATTAGAAGAATTTAGCAGCAGTTATTTTGTGGATGCTTGCTGCAATTTTTTTTTTTTTTGAAGGGGTTAGGGTGGTGGTCATATCCGTCCAGAATCAAAGATTTTTACTTTTTATGCAATGATAGTCATCCATCACACATGGATCCAACAAGCCATGCATTTTCTTCTGTAGTTTTTTTTCATGACAGTGATATAGCATTTAGTTCTCCCACTGCAAAAGCAGAAGTACTGGACAAACCAAAGATTCTATTCTTATAATATATGTTTAGTTAAATATCTAGTAAAGATATAACAGAGCGGTCAAGAAGTGCATTATAACTAAACGATAAGCTGTTAGTTTGCCAACAGTGAGTATATTGAATAGGCCTACACAAGTTGAATTCTAAATCAAAACTGAACCTGATTACATTGGGTTAAAAACTGTGATCAAGCTATGAGATCTTATAATTTTCGGTAACACTTTATTTTACAGTGTCATTGTTACACGTGTTACATGTAGTTACTGAAGTAATAACTATAAATTATGCATAATTACATTAACCCTAAACCAAACCCTCATCCTAAACCCTAACCTTATAGTAAGTTAATTATTATTACTCAGTACTTAAATGTATAATTACACTGTAACACGGACACCTTAAAATAAAGTGTAACCATTTTCTCTGTTATTATGAGCAAAACTGTAAGAAAAATGGCTATAGATTTAAATGTTCAGATTCATTGAGCTTGTTTGTGCAAGTGTAATAATATATGTGTTCATAAAACAACAAAAAATGCATCAACGAAGATTTAGACATGGTTTCAGTGCAATTAGGCAAGTTTACAATATACTTTAGTCTTATGCATTAGTTTGCCAGATTTAGCTTTGGGAAGTGTTACTACATCAGATTTTAAATAAACAGATGATTTTTCCATTTAAGGCATCCATTTGTTCCATTTGTTGAATGTGCTTACGTGTAGGTTTACGTGAGTGTTTGTTATGGGTGGGGTAAACAGAGAGCAATAGGTCATTATTAGAGTTACAGTATTTAAAACTGTGTGCTAATGCTCGTCACTTCGCCTGAGGCTGTCATCTTTAACCTCATCAACCCTGTGTCACAACATTCCTAGCTCTTAAAAGACAAGTTGGGAGCCAGAATGACTGTGCTGTCTTTTCCGAAGCAGGTAGAAAATATTAGATAACTATTATTAAGTATCATTGATTTCTTATCAGAGATTATTCAATCAAAGTTTTTTGAGTTGTGACTGTACTGTTCTTATTGACTCAAATGCATTTTAGTGGTGTTGTGACACACTTGGTAGTTTTTTTATCAGTAGCTGATTTTATTTTCACTCAATGAAACATTCAAATACTCTTTTGACCCCATTTCTGATTAAATCTGGTTTGGAGGTCATCTTTAATTAGCCATGCTTCCACTCTA
>TU525909
GGGGCTTTAAGAATGACTGCCTAGAATAATCTTTCTATTGTCATTTCTGTAACATTTAAGACCGGCATGTGGCATCACTCCACTAGTGGGAACACTACTCTTCTATGTGAAGCTGATATAGCCTTTGTCCAATATGAAATTGCTACAATCTCGATTAATTTCGACGTTTAGTCTATCAATAGACATTGACATAGTAGTTTAGGGTTGGGCTCGTTTTGTTTAGATCACACAAGAATGCTCCCCACCTTGAAAAAAAATAGAAAAAAAGTTTCACCGAAGAAAAAGCGTCTCGCTGTTCGCTGCCAGGGCAACCGTAAGTCCAACCTACCGCCATAGCAGAATTACCTGAATTCTCCTCACGTGACCGATCCCCAGGCCGGTCGACCAATCAGAACAGAGAACAGGTGCACTCATTGTAGTTTCGGAGGTGGAATCTCAGGTACTCTTGTAAACTGCGACGGCACTATAAAGTCTTTCACGTAAGTTCAGATTTTGCGTGGTATATTAAGAACCTCCTTTAGGTGATGTTGGGCAAAGGATGATGTTACGCTTTCTCAGAGACAAAAAGATATCCTTTCAGTCGAGTTATGTGCAAAACTGCGTCTCAGTGATTGAAGTCTTCGGATACGTGGGAGAGAAAGATGATTTTCACGCACCGTGATTTCTTCTGAGGATTCAGCGTCTCTGTTGTTTCAACACACCTTTCATTTAGAGGAACCTCGGGCTGCGTTTATCTTGTTCTCATCATTTTTTGTCCAGTTCTAACAATGACGGAGAAAACAGCTCCCTGGTGGAGGTCTTTCGTGGGCAAGAGGAGAAAAGCAGCCAGAGAATCGGCAGCGAATCTGGAACAGGACCTCCGTAATCAGGCTTCAGCAGAGTCCACACAGCATCATCCCTCCGCTGAGCCGGACCAACAGCTCACTTCACCGACACGTCCAGCGAAAGAAGCAGACAACTGCTTACCGAGCGACGAAACGTATGACGACTCTGCTGTTCAGCCAACTTTCAACGAGCGCTCCAATCGCCGTAATCTCCTTGTGTCCCGCTCCGGTCGCTTCAAAGAGAAACGGAAGACGCGCACGAGTCTACTACAGAACCACGAAGATGATGGGAAACCTGCCGCTGCCAAATCAACCGACGTTCAGTCAACGCACTGACTGCAAATTAGGTTTACATCCGATGGTAGAGCACTATATAGGCTACGGCACTACCTCCAGACTGACACTGTTGAAAATTTGACTTATGAATGCACTTATGACGTTAAGGGTATAAACTCTTGGAGTAGCCCGAGTTATCCATATCACAGGAGCTTTTTTTTCCAAATGCTGGAAATAATGACATTTTCCTGCTGGAAAACACTACATACTTTGTCTCTTAGCCTAGTCAGGCTTGTCATTTTGCAGGGTTTAAAGGGTTTTTGGGCACTACTGGTCTAGCTGGCTGACTAAGTCCAGCTAGGCCGGTCTGGGAGACTAGCTAGACCAGTCTAAACCTGCTAAGACCAGCAAACCATAAGCTGTTTTTTTCCCCCAGCAGGGTGTTCAGTAGAATCTTTTTTGTTTTGTTTTGTGAAGGATACAATGTAATTTTGTCAAATAATTGCACTGTTTTGTGGTGTTACTGCAATATTTTATGAAGGACTTTACATTAGAAGAATTTAGCAGCAGTTATTTTGTGGATGCTTGCTGCAATTTTTTTTTTTTTTGAAGGGGTTAGGGTGGTGGTCATATCCGTCCAGAATCAAAGATTTTTACTTTTTATGCAATGATAGTCATCCATCACACATGGATCCAACAAGCCATGCATTTTCTTCTGTAGTTTTTTTTCATGACAGTGATATAGCATTTAGTTCTCCCACTGCAAAAGCAGAAGTACTGGACAAACCAAAGATTCTATTCTTATAATATATGTTTAGTTAAATATCTAGTAAAGATATAACAGAGCGGTCAAGAAGTGCATTATAACTAAACGATAAGCTGTTAGTTTGCCAACAGTGAGTATATTGAATAGGCCTACACAAGTTGAATTCTAAATCAAAACTGAACCTGATTACATTGGGTTAAAAACTGTGATCAAGCTATGAGATCTTATAATTTTCGGTAACACTTTATTTTACAGTGTCATTGTTACACGTGTTACATGTAGTTACTGAAGTAATAACTATAAATTATGCATAATTACATTAACCCTAAACCAAACCCTCATCCTAAACCCTAACCTTATAGTAAGTTAATTATTATTACTCAGTACTTAAATGTATAATTACACTGTAACACGGACACCTTAAAATAAAGTGTAACCATTTTCTCTGTTATTATGAGCAAAACTGTAAGAAAAATGGCTATAGATTTAAATGTTCAGATTCATTGAGCTTGTTTGTGCAAGTGTAATAATATATGTGTTCATAAAACAACAAAAAATGCATCAACGAAGATTTAGACATGGTTTCAGTGCAATTAGGCAAGTTTACAATATACTTTAGTCTTATGCATTAGTTTGCCAGATTTAGCTTTGGGAAGTGTTACTACATCAGATTTTAAATAAACAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU525908 False 2647 TUCP 0.39 2 1032063 1035725
TU525909 True 2551 TUCP 0.40 2 1032582 1036148

Neighbor

gene id symbol gene type direction distance location
CI01000321_01019890_01027358 NA coding downstream 4705 1019744 ~ 1027358 (-)
CI01000321_00962639_00981042 SMARCC1, SMARCC1A coding downstream 50844 962230 ~ 981219 (-)
CI01000321_00922020_00945388 NA coding downstream 86675 921501 ~ 945388 (-)
CI01000321_00822740_00840482 DYNC1LI1 coding downstream 191581 822456 ~ 840482 (-)
CI01000321_00737310_00746720 CFAP44 coding downstream 285343 737209 ~ 746720 (-)
CI01000321_01057908_01060166 NA coding upstream 21582 1057730 ~ 1060497 (-)
CI01000321_01090482_01118656 TAX1BP1A coding upstream 52840 1088988 ~ 1118690 (-)
CI01000321_01174323_01177482 EVX1 coding upstream 137319 1173467 ~ 1179886 (-)
CI01000321_01285727_01288625 SNX10A coding upstream 249444 1285592 ~ 1288625 (-)
CI01000321_01290633_01292869 NA coding upstream 253987 1290135 ~ 1292936 (-)
G458064 NA non-coding downstream 31167 996819 ~ 1000896 (-)
G458059 NA non-coding downstream 131956 886796 ~ 900107 (-)
G458081 NA non-coding downstream 148259 883271 ~ 883804 (-)
G458076 NA non-coding downstream 160867 870866 ~ 871196 (-)
G458074 NA non-coding downstream 163624 864618 ~ 868439 (-)
G458126 NA non-coding upstream 10298 1046446 ~ 1046664 (-)
G458128 NA non-coding upstream 27522 1063670 ~ 1064011 (-)
G458129 NA non-coding upstream 30054 1066202 ~ 1066558 (-)
G458166 NA non-coding upstream 161136 1197284 ~ 1197528 (-)
G458102 NA non-coding upstream 207340 1243488 ~ 1244431 (-)
G456607 NA other downstream 932868 96116 ~ 99195 (-)
G456609 NA other downstream 992123 39518 ~ 39940 (-)
G456597 NA other downstream 1004790 25639 ~ 27273 (-)
CI01000321_01451689_01453423 NPY other upstream 415046 1451194 ~ 1453530 (-)
CI01000321_02282824_02284376 MBPA other upstream 1236897 2282238 ~ 2284934 (-)
CI01000321_03044953_03048124 NA other upstream 1951992 3044880 ~ 3048203 (-)
G458802 NA other upstream 2051967 3088115 ~ 3091927 (-)
G458859 NA other upstream 2435733 3471881 ~ 3489534 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014704 NA non-coding NC_007130.7 CM002903.2 19459051 ~ 19461297 (-)
tiger barb (Puntius tetrazona) LOC122323308 LOC107748748,LOC107592064,LOC107710321,LOC107688414,LOC107602392 misc NC_056717.1 CM032086.1 15644862 ~ 15648579 (-)