Gene
RNA
| Item | Value |
|---|---|
| gene id | G458126 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000321 |
| NCBI id | null |
| chromosome length | 5206101 |
| location | 1046446 ~ 1046664 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU525913 | True | 219 | lncRNA | 0.37 | 1 | 1046446 | 1046664 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000321_01019890_01027358 | NA | coding | downstream | 19088 | 1019744 ~ 1027358 (-) |
| CI01000321_00962639_00981042 | SMARCC1, SMARCC1A | coding | downstream | 65227 | 962230 ~ 981219 (-) |
| CI01000321_00922020_00945388 | NA | coding | downstream | 101058 | 921501 ~ 945388 (-) |
| CI01000321_00822740_00840482 | DYNC1LI1 | coding | downstream | 205964 | 822456 ~ 840482 (-) |
| CI01000321_00737310_00746720 | CFAP44 | coding | downstream | 299726 | 737209 ~ 746720 (-) |
| CI01000321_01057908_01060166 | NA | coding | upstream | 11066 | 1057730 ~ 1060497 (-) |
| CI01000321_01090482_01118656 | TAX1BP1A | coding | upstream | 42324 | 1088988 ~ 1118690 (-) |
| CI01000321_01174323_01177482 | EVX1 | coding | upstream | 126803 | 1173467 ~ 1179886 (-) |
| CI01000321_01285727_01288625 | SNX10A | coding | upstream | 238928 | 1285592 ~ 1288625 (-) |
| CI01000321_01290633_01292869 | NA | coding | upstream | 243471 | 1290135 ~ 1292936 (-) |
| G458064 | NA | non-coding | downstream | 45550 | 996819 ~ 1000896 (-) |
| G458059 | NA | non-coding | downstream | 146339 | 886796 ~ 900107 (-) |
| G458081 | NA | non-coding | downstream | 162642 | 883271 ~ 883804 (-) |
| G458076 | NA | non-coding | downstream | 175250 | 870866 ~ 871196 (-) |
| G458074 | NA | non-coding | downstream | 178007 | 864618 ~ 868439 (-) |
| G458128 | NA | non-coding | upstream | 17006 | 1063670 ~ 1064011 (-) |
| G458129 | NA | non-coding | upstream | 19538 | 1066202 ~ 1066558 (-) |
| G458166 | NA | non-coding | upstream | 150620 | 1197284 ~ 1197528 (-) |
| G458102 | NA | non-coding | upstream | 196824 | 1243488 ~ 1244431 (-) |
| G458177 | NA | non-coding | upstream | 218847 | 1265511 ~ 1265768 (-) |
| G458122 | NA | other | downstream | 10298 | 1032063 ~ 1036148 (-) |
| G456607 | NA | other | downstream | 947251 | 96116 ~ 99195 (-) |
| G456609 | NA | other | downstream | 1006506 | 39518 ~ 39940 (-) |
| G456597 | NA | other | downstream | 1019173 | 25639 ~ 27273 (-) |
| CI01000321_01451689_01453423 | NPY | other | upstream | 404530 | 1451194 ~ 1453530 (-) |
| CI01000321_02282824_02284376 | MBPA | other | upstream | 1226381 | 2282238 ~ 2284934 (-) |
| CI01000321_03044953_03048124 | NA | other | upstream | 1941476 | 3044880 ~ 3048203 (-) |
| G458802 | NA | other | upstream | 2041451 | 3088115 ~ 3091927 (-) |
| G458859 | NA | other | upstream | 2425217 | 3471881 ~ 3489534 (-) |
