XLOC_013158 (pigb)


Basic Information

Item Value
gene id XLOC_013158
gene name pigb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 2203945 ~ 2222128 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026106
ATGGAAAAGATTCGAGAGCGGTTTAAACAGAGCAAGTCTTCAAATGAATCAGTGAGGCTGCGGAAGAGGAGCTCAATTCTGTACAGCACTGATGACAGAAAACTGCAAACACTCAAAATCTTTGGCATCAACATCACCGTTTTCATCGTCCTCGTCCGCCTGCTCAACTGTGTTCTGGTTCAGACCAGCTTTGTCCCGGATGAGTTCTGGCAGTCGCTGGAAATCTCCCATCGAATGGTCTTCGGTTATGGCTACGAGACCTGGGAGTGGAAGGAAGGCATTCGGGGATATTCGTATCCTCTTCTGTTCGCTCTGATGTATAAACTCCTGCAGCTCAGCAGTTATGACACCGTTTATTTGTTGGTGTTTGTGCCGCGTGTTTTCCAGGCGCTTCTGGCTGCATATGCTGATGTGAAACTGTATAAACTCATCCTCCAGTGGGAAACGCCAGACGTGGCCAAATGGACATGTTTCTGTCAGCTGTGTTCGTGGTTCACCTGGTTTTGCTGCAGTCGGACGCTGACAAACACTACAGAGACAGCTCTGACCACACTGGCGCTGTGCTTTTATCCTTTACCTGGATCCAAAGCACACAGCAGCTGGAAGTATTTGACTCTGGTTTCTTTGGCTGTGGTCATTCGTCCCACGGCTCTGATCGTCTGGTTTCCTCTGATCTTCTATCATTTCTGTACAGATCAGGACAAACTGAAGCTCATCACACACAGATACTTTCCTATTGGGGCTCTTGCACTGGGCGTCTCCACACTGATAGACTCTTTTTTCTATGGAAAGtGGATCTTCGTGCAGTGGAACTTCCTAAAGTTTAACGTTCTGCACAATGTGGGTGAGTTTTACGGCTCTCACCCATGGCACTGGTACTGGACTCAGGGTCTGCCGGTGGTCATCGGCCCACACCTCCCGCTCGTCCTGCACGGATGCTTACTGTCCACCAGAAAACACACCATCCTACTGCTCACCATCATCTGGACCACTGCCGTATACAGtttgcttGCACACAAGGAGTTCCGGTTCATTTATCCTGTGTTGCCGTTCTGTGTGATATTTTGCGGTCTTTCATTAGCGAAGCTGCAGGCGTGGAGGAAAGCTGCTGCTGGTGCCCTGCTGCTCTTCAATCTGTGTCCTGCTTTATATACGGGTTTAGTTCACCAGCGTGGAGCTCTGGATGTCATGCATGTCCTGCAGCCGCTGTGTGTTGCTAGTCAATCTCCAAACCCACCTGAGCTGCTGTTCCTCATGCCCTGCCACTCCACACCTCTCTACAGTCACCTCCACTGTCCTCTAAAGCTGCGCTTCCTGGAGTGTCCACCGGATCTGACTGGACGGCAGGATTATATGGATGAAGCTGAAGTTTTCTTCTCAGATCCGCTTCACTGGCTCAACACATCCTTCCCTTTGCGGTCCACACTGCCTTCACATTTAGTGCTGTTTGACTCCCTGCAGAAGGAGATTTCTTCATTCCTGGAGGAAAACAGCTTTGCCAAACAAGCTGAAATATTCCACACTCACTTTCCTGAGGGGCGAGTGGGAAAGAATATATTAATATACAGCAGAAGATCTGAAATGAAGATTAATGATGGTTTCATCCTTTAAAGATGTACTGTATTAATAATGCTTTGAGTTTCTGTCTcgtttttagtctaaatatccTTAAATCAAGACGCATTTTCTAGACATGTGcaaactattgttttgttttcataaataatatgtggaaataaagattttctttaaaacaagctaagtTATCTGCCGAATGCATGTGgttagtaaaataatcttatctCAAAGCAAAAACAGGATCATTTACTTACAGTACATGTGCAAGATTTACCACTTTATTACTCCATTggcatttcattttataaataaaattaacctcTTCAGTTTTCAGTTCTgacaataaaacaacatttatgtttttaaaataatcagatagttatattaaaataatcagattattatataataataat

Function

symbol description
pigb Predicted to enable alpha-1,2-mannosyltransferase activity. Predicted to be involved in GPI anchor biosynthetic process. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 80. Orthologous to human PIGB (phosphatidylinositol glycan anchor biosynthesis class B).

GO:

id name namespace
GO:0006506 GPI anchor biosynthetic process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0000026 alpha-1,2-mannosyltransferase activity molecular_function
GO:0000030 mannosyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
ko00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
ko00333 Prodigiosin biosynthesis
ko01003 Glycosyltransferases

ZFIN:

id description
ZDB-GENE-040426-1216 Predicted to enable alpha-1,2-mannosyltransferase activity. Predicted to be involved in GPI anchor biosynthetic process. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 80. Orthologous to human PIGB (phosphatidylinositol glycan anchor biosynthesis class B).

Ensembl:

ensembl_id ENSDARG00000105011

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026106 True 1994 mRNA 0.44 12 2203945 2222128

Neighbor

gene id symbol gene type direction distance location
XLOC_013157 NA coding downstream 59452 2142227 ~ 2144493 (-)
XLOC_013156 NA coding downstream 223070 1978729 ~ 1980875 (-)
XLOC_013155 pepd coding downstream 789185 1291434 ~ 1414760 (-)
XLOC_013154 NA coding downstream 923197 1259502 ~ 1280748 (-)
XLOC_013153 ugt5f1 coding downstream 933725 1249631 ~ 1270220 (-)
XLOC_013159 NA coding upstream 55697 2277825 ~ 2372579 (-)
XLOC_013160 CR769778.1 coding upstream 154939 2377067 ~ 2433011 (-)
XLOC_013161 CABZ01070631.2 coding upstream 214859 2436987 ~ 2549198 (-)
XLOC_013162 CABZ01070631.1 coding upstream 283904 2506032 ~ 2506169 (-)
XLOC_013163 relt coding upstream 378831 2600959 ~ 2668698 (-)
XLOC_013384 BX323829.1 misc upstream 17319974 19542102 ~ 19542231 (-)
XLOC_013150 CU469514.1 non-coding downstream 975257 1151453 ~ 1228688 (-)
XLOC_013165 NA non-coding upstream 713495 2935623 ~ 2941879 (-)
XLOC_013166 CU570791.4 non-coding upstream 840034 3062162 ~ 3062278 (-)
XLOC_013171 NA non-coding upstream 1310556 3532684 ~ 3533707 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_12846104_12850954 NA coding CI01000054 null 12845178 ~ 12851346 (+)