Gene
RNA
| Item | Value |
|---|---|
| gene id | G457001 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000321 |
| NCBI id | null |
| chromosome length | 5206101 |
| location | 1284368 ~ 1293217 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU524592 | True | 8548 | lncRNA | 0.34 | 2 | 1284368 | 1293217 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000321_01242644_01243808 | HOXA1A, HOXA1 | coding | upstream | 39955 | 1241961 ~ 1244413 (+) |
| CI01000321_01238511_01240051 | NA | coding | upstream | 44042 | 1238374 ~ 1240326 (+) |
| CI01000321_01227049_01234989 | HOXA3A | coding | upstream | 49223 | 1226351 ~ 1235145 (+) |
| CI01000321_01221875_01223087 | HOXA4, HOXA4AB, HOXA4A | coding | upstream | 60753 | 1221564 ~ 1223615 (+) |
| CI01000321_01213692_01214996 | HOXA5A | coding | upstream | 69112 | 1213561 ~ 1215256 (+) |
| CI01000321_01342947_01344272 | NPVF | coding | downstream | 49683 | 1342900 ~ 1344611 (+) |
| CI01000321_01348009_01350252 | NA | coding | downstream | 54792 | 1348009 ~ 1351774 (+) |
| CI01000321_01362387_01381302 | OSBPL3, OSBPL3A | coding | downstream | 69170 | 1362387 ~ 1382657 (+) |
| CI01000321_01411682_01416499 | NA | coding | downstream | 118465 | 1411682 ~ 1416536 (+) |
| CI01000321_01473475_01476619 | CCDC126 | coding | downstream | 180258 | 1473475 ~ 1477216 (+) |
| G457034 | NA | non-coding | upstream | 17703 | 1266462 ~ 1266665 (+) |
| G457033 | NA | non-coding | upstream | 18611 | 1265543 ~ 1265757 (+) |
| G457025 | NA | non-coding | upstream | 38732 | 1245299 ~ 1245636 (+) |
| G457022 | NA | non-coding | upstream | 105251 | 1178567 ~ 1179117 (+) |
| G457012 | NA | non-coding | upstream | 113109 | 1171018 ~ 1171259 (+) |
| G457000 | NA | non-coding | downstream | 2249 | 1295466 ~ 1299847 (+) |
| G457104 | NA | non-coding | downstream | 93332 | 1386549 ~ 1386987 (+) |
| G457106 | NA | non-coding | downstream | 95136 | 1388353 ~ 1388687 (+) |
| G457107 | NA | non-coding | downstream | 95515 | 1388732 ~ 1389229 (+) |
| G457108 | NA | non-coding | downstream | 96374 | 1389591 ~ 1390054 (+) |
| CI01000321_00815160_00819665 | NA | other | upstream | 461521 | 815160 ~ 819749 (+) |
| G456774 | NA | other | upstream | 857343 | 426083 ~ 427025 (+) |
| CI01000321_03795430_03804685 | SHISA7B, SHISA7 | other | downstream | 2496101 | 3792915 ~ 3805511 (+) |
| CI01000321_04013470_04014515 | CACNG8 | other | downstream | 2713409 | 4013468 ~ 4015412 (+) |
| G459303 | NA | other | downstream | 3192180 | 4485397 ~ 4488552 (+) |
| CI01000321_04515562_04517953 | MRPS21 | other | downstream | 3222317 | 4515534 ~ 4518187 (+) |
| CI01000321_04748037_04748315 | DPM3 | other | downstream | 3454195 | 4747650 ~ 4749579 (+) |
