G457000


Basic Information

Item Value
gene id G457000
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 1295466 ~ 1299847 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU524588
AGTGTTTTCAGTTTGTCATCTGACCTGCTTATTTCAGGATGACTTTACAAAAACAGGTTCTTGAGAGGAAAAAGCCTCAGAACTCAAAGTCCATCTCTATACTGCTAATCTTTGTCATAAGACCTGCAACCAGCTAAGCAAATGGTAATATGTGGTCATAATTTGTTAGTAGGCAGTGAGGTTACAGACATCAGGCAGCTCTTTTCCCTTCTCGTTAGTTTCAAGATAACTAAATAAGAGTCAGATACATGGTGAATGACTGCTTTTTCTCAATTTAATAACATGACTACCACAACCCAGATTACAGATATTACATTTTTTAGGCGAATTTTACATTTTACATATAGAAAGAGGCGCCTTCTGCATCCCACGTCTGATAAAGTGTGCAGAACATGAACTTGTGAACTCTGACCCTGATGGCAAGAAAGGTCAGGAACTGTAATGACATTATTGGTCACATTGCTTTTTCTATGGTTAACCGTCTGTCTTTGTGTATTTTAGATAAGCAGAATATATATCTAACAGATTCCAGTTAATGTCTGGGAAAGCAATTTCTAAATTGTGTGATTGACGCTCAAAAGCATTAGGAGAAAAACCCCTGAAAGACAAAACGAGGACACAATTAATGATTCTGACTCTGGAAAATTTATGGCTCAACTAAATTGTGCAATTAAACATTTATAAGTCATTTGTCGCCCTGATTACAAAATGTGGGCGATTTATCATCTACTTCCTAAATTCTCAAATGACCGTGGATGAAAAGCATTTTGTGCTTTGAACAGAGCATAAAATAGCCTACATAAACAGTAAAAGCAATCAGACATTGTTTAAAAATAAGGCAACCAACAATTCTGCTGGGAGACTATTCTAATGAAAGTGACACACTGATACAAAAGACTCATTCTTATAAAGATAATGAAAAAATAAAAATAAATCCAGTACAGAAGGCCACCCAGAGTGGAACCAAATGCATTGTGAAATAATGTTTTTTCCACTCTTCCTCATTTTAATTACCAATTGGTAAGGAGCTTTGTTTAAAGGTACAATATATAACTTTTACAAAATAAAACTGCATGCGACTTGTGGAAGAACATTTTAGATGGAGCTACTTTGTTTACGCACATGACGAGCCACGCGGGTACTGGGCTACTCCACACAGTTACATAGTGTACCTTTAAAATCCATTATTACTGCAAAACAGTTTTGACCTACAAAAGCAGGCACAAGACAGCTGTGGCACTTTAATCTGTTCATTCCATCGTTTTTAACGAAGCTACTCACAACCACGCCAAAGCGTTAAAATAGCAGAAGGTGGCAAACAGATGTTTTGCGAATGTTAGAGGTTCTCTCATTTAATACAAAGAGATCCATCTATTATATGTTTGTACAAAAAGCACATTTTAGTATGCTTAACAGCAGTTCCAAAGTCTGTCAAATACAAGAAAACAAAAGTCATGCCACTCACTTCTTTGACATGTGGTGGAAAACGGCTCACTACATCACACCACAAAAAAAAGCACATTGCATGCTAACAGCCCCAAGAAAACACTTTAAAAGCACTCAAATAACCATGTTTTGAGGCAGACAGTAAAGGCTTCATAGCCATAAATATCGGACAAAACATCTGCTTTGGATATTCAAGACATCATGCAAGCAGATTAAAAGCAGGCATATAAACCTTTATTGAACTAAAAAATAAGAAATATTTACACAAACATTTACATAAACAGACACTTTCAATATTCATGTAAACAATACGAATAAAAAGAAAACTACTACAATAATGACAACATTGCCAACCAAAAGAAACTATGAACATGAATAGAAACATGTTTTGGATCCCTTTCAATGACAAGATGAGTGGAGGAAAAACACAAGCCAGTGCGTTAATCATGAAAAGCACCGCGGTGACACCTAGTTCAAAGAAACAGTTAAAGCATCCTATATGGTAACTTTTAAAAACACTCATCTCATCTGCACATACTTTCATTGGTTCACTACAGTCATGCACACAGCTTCCAGCCAAATCTCAATACATTTAAAATTCCTCCACCGTCAGACTATCAACACTTCTGCTAATACTGTACAGGTGGAAGACACTAACGTATGGTTCAATGAGATTTGAGGTGCTACTGCTGCTCATCCTCAGGACAGGAATGCCAAGTTAGTCTTTCCTCATAAAAGGCAATGACTATCTGTGGGCAACGGGTGTTGGCCTCTCGTGCAGGCACCAGGTCCGCCTCATCAGAGTCCTCCACTTCATGAGGAACATGAGCTCCCCACTGCTGTCAGTCGCTCCAATGATCCTCTCCGGCTCAAGGTTTCTTGCAAACCCTCTTGGCTTGTCAGACTGCAGCAACATCAGTTTTAGCAATAAGAACCAACGTTAAAATCCATCACACCTTCCAGATAAGAGCCTTCAAAATGCCTTAAAGTGACAAATTAATAAACTGATGGCCAACACACAATCTTACCATTTCCTTCTTTCTTTTTGCCTTGCTCTCCTCTGTTTCTGGTTCATCAGTGGAGGATTTTCTTTTTACAGCTTCTGGTTTTTCCACTACTCCTTTCTGAGACTCCAGGAATGCAGCAATCAGTTCAGGACAGTCTAAATTCTCTTCAGGCTCCCAGGTGTTGTCAGCACTGAAGAAAACATTAGCATATCTTGTTAATCTAATCACATAGCAAGATTTATTGACAAAACCCTCCCAAAAATAGATTCTCCATTTCATTATACCCACAAGAAATCAAAGTAAAAAAAAAATACTTACTCTGTAAAGCCTTTCCACTTGAGGAAAAACTCAACTTTTCCGTTGACCACTCGCTGGTCGATCACTTTCTCCACCACAAACTCCTCTACTTCCTGAACTTCTTTCTTTGATTTGTTTCCCTGCTTCTTACCCATGTCGACCTAAAACGTGCAAAAGACTGAAATGATGAATCAGGAACCTGATTAAGGATTTAAAGTCATTTAAAACTTGAAACATTTAAAGGCATGTTCCTCTTCGAAAAAATAAATGAATAAATAAATCATTTAAGAAAAAAGTTGCCATATTTATGACTTGCACAATGATGCTAAAATGGCTAATGTTTACACATTTACTGAAAGATTAGTTCAAGCCCGTTTATAAACGCTCTAAGATCTTAAAAATCCACTTAAGCCTTTGCGATTAACGTCAAAACTAATTAAGTTACGTGGTGCCTTTTATGTGTTGCTAGTATGATAACGAGCTAACTACGCATGTATGAACAGGCCAGAGGCCCGAACGTAGTTCAAACTACTTTTTGGGATTATACCTTTTATTATATCTGGATAACCGTGCTGTCCAAATGAATGTCTGACTATTACAAAAATCGTTGTTCTCTTATTATTCACTAAAACACTCGCTGGTTTTAGATAGCCAGAGTTAGCTTAATCGCTAGTTGGAAAATACACACACACACACACATTAAAAACACCAGGTTATAAAATATATGTATGTTATAAAACATCCTGCATATATGTATCTTACATCTACGCAAACTGAAACAAGTAAAGATACCAAAACAACAGATTTAAGACAAATGCGTATTGCAATAAATGAAGCTGCAGCATTGTAACAGCAAACTACAATGGACGGTGCTGCAGCACGAGATGCATGCGCGCGAAAACTCACCCTCACAATGGAAAAGGATTAAATGTGATTTACAAATCTTCACGCTTCTCGACCTGCAAATAGCTGCAGCAAAAACGTTTCGCACTTTAACAAGGCACAAACTTTTAAAACTTTTACTCACTTGGTACACTATAAATCAATGGAAGAGAAGTCGACTGAGGCTCGACGAAGGCCAGCCCGAATCGTACG
>TU524590
GGCATATAAACCTTTATTGAACTAAAAAATAAGAAATATTTACACAAACATTTACATAAACAGACACTTTCAATATTCATGTAAACAATACGAATAAAAAGAAAACTACTACAATAATGACAACATTGCCAACCAAAAGAAACTATGAACATGAATAGAAACATGTTTTGGATCCCTTTCAATGACAAGATGAGTGGAGGAAAAACACAAGCCAGTGCGTTAATCATGAAAAGCACCGCGGTGACACCTAGTTCAAAGAAACAGTTAAAGCATCCTATATGGTAACTTTTAAAAACACTCATCTCATCTGCACATACTTTCATTGGTTCACTACAGTCATGCACACAGCTTCCAGCCAAATCTCAATACATTTAAAATTCCTCCACCGTCAGACTATCAACACTTCTGCTAATACTGTACAGGTGGAAGACACTAACGTATGGTTCAATGAGATTTGAGGTGCTACTGCTGCTCATCCTCAGGACAGGAATGCCAAGTTAGTCTTTCCTCATAAAAGGCAATGACTATCTGTGGGCAACGGGTGTTGGCCTCTCGTGCAGGCACCAGGTCCGCCTCATCAGAGTCCTTCCACTTCATGAGGAACATGAGCTCCCCACTGCTGTCAGTCGCTCCAATGATCCTCTCCGGCTCAAGGTTTCTTGCAAACCCTCTTGGCTTGTCAGACATTTCCTTCTTTCTTTTTGCCTTGCTCTCCTCTGTTTCTGGTTCATCAGTGGAGGATTTTCTTTTTACAGCTTCTGGTTTTTCCACTACTCCTTTCTGAGACTCCAGGAATGCAGCAATCAGTTCAGGACAGTCTAAATTCTCTTCAGGCTCCCAGGTGTTGTCAGCATCTGTAAAGCCTTTCCACTTGAGGAAAAACTCAACTTTTCCGTTGACCACTCGCTGGTCGATCACTTTCTCCACCACAAACTCCTCTACTTCCTGAACTTCTTTCTTTGATTTGTTTCCC
>TU524591
GTTTGGCGCAACACAAGGTTGAGGAAATGTCAATTTTATTTAATGTTATGTTCTTATTTCCAGTCAATTAAATGAGAAAACTACATGGGTTTCTTACCACTTCATGAGGAACATGAGCTCCCCACTGCTGTCAGTCGCTCCAATGATCCTCTCCGGCTCAAGGTTTCTTGCAAACCCTCTTGGCTTGTCAGACTGCAGCAACATCATTTCCTTCTTTCTTTTTGCCTTGCTCTCCTCTGTTTCTGGTTCATCAGTGGAGGATTTTCTTTTTACAGCTTCTGGTTTTTCCACTACTCCTTTCTGAGACTCCAGGAATGCAGCAATCAGTTCAGGACAGTCTAAATTCTCTTCAGGCTCCCAGGTGTTGTCAGCACTGAAGAAAACATTAGCATATCTTGTTAATCTAATCACATAGCAAGATTTATTGACAA
>TU524586
GCTCCAATGATCCTCTCCGGCTCAAGGTTTCTTGCAAACCCTCTTGGCTTGTCAGACTGCAGCAACATCATTTCCTTCTTTCTTTTTGCCTTGCTCTCCTCTGTTTCTGGTTCATCAGTGGAGGATTTTCTTTTTACAGCTTCTGGTTTTTCCACTACTCCTTTCTGAGACTCCAGGAATGCAGCAATCAGTTCAGGACAGTCTAAATTCTCTTCAGGCTCCCAGGTGTTGTCAGCACTGAAGAAAACATTAGCATATCTTGTTAATCTAATCACATAGCAAGATTTATTGACAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU524588 False 3845 lncRNA 0.37 2 1295466 1299847
TU524590 False 973 lncRNA 0.42 4 1297133 1298893
TU524591 False 431 lncRNA 0.41 2 1298161 1298703
TU524586 True 295 lncRNA 0.42 2 1298297 1298703

Neighbor

gene id symbol gene type direction distance location
CI01000321_01242644_01243808 HOXA1A, HOXA1 coding upstream 51053 1241961 ~ 1244413 (+)
CI01000321_01238511_01240051 NA coding upstream 55140 1238374 ~ 1240326 (+)
CI01000321_01227049_01234989 HOXA3A coding upstream 60321 1226351 ~ 1235145 (+)
CI01000321_01221875_01223087 HOXA4, HOXA4AB, HOXA4A coding upstream 71851 1221564 ~ 1223615 (+)
CI01000321_01213692_01214996 HOXA5A coding upstream 80210 1213561 ~ 1215256 (+)
CI01000321_01342947_01344272 NPVF coding downstream 43053 1342900 ~ 1344611 (+)
CI01000321_01348009_01350252 NA coding downstream 48162 1348009 ~ 1351774 (+)
CI01000321_01362387_01381302 OSBPL3, OSBPL3A coding downstream 62540 1362387 ~ 1382657 (+)
CI01000321_01411682_01416499 NA coding downstream 111835 1411682 ~ 1416536 (+)
CI01000321_01473475_01476619 CCDC126 coding downstream 173628 1473475 ~ 1477216 (+)
G457001 NA non-coding upstream 2249 1284368 ~ 1293217 (+)
G457034 NA non-coding upstream 28801 1266462 ~ 1266665 (+)
G457033 NA non-coding upstream 29709 1265543 ~ 1265757 (+)
G457025 NA non-coding upstream 49830 1245299 ~ 1245636 (+)
G457022 NA non-coding upstream 116349 1178567 ~ 1179117 (+)
G457104 NA non-coding downstream 86702 1386549 ~ 1386987 (+)
G457106 NA non-coding downstream 88506 1388353 ~ 1388687 (+)
G457107 NA non-coding downstream 88885 1388732 ~ 1389229 (+)
G457108 NA non-coding downstream 89744 1389591 ~ 1390054 (+)
G457109 NA non-coding downstream 91071 1390918 ~ 1391184 (+)
CI01000321_00815160_00819665 NA other upstream 472619 815160 ~ 819749 (+)
G456774 NA other upstream 868441 426083 ~ 427025 (+)
CI01000321_03795430_03804685 SHISA7B, SHISA7 other downstream 2489471 3792915 ~ 3805511 (+)
CI01000321_04013470_04014515 CACNG8 other downstream 2706779 4013468 ~ 4015412 (+)
G459303 NA other downstream 3185550 4485397 ~ 4488552 (+)
CI01000321_04515562_04517953 MRPS21 other downstream 3215687 4515534 ~ 4518187 (+)
CI01000321_04748037_04748315 DPM3 other downstream 3447565 4747650 ~ 4749579 (+)

Expression


Co-expression Network