G457108


Basic Information

Item Value
gene id G457108
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 1389591 ~ 1390054 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU524725
CAATCAATCCCTCATTACAAACATACTAGCTGGACAGTGGAGTTACATTTTATGGACTTACCTTTCCAGCAAATCACATCACTCTTTATTAGATTATCACTTCTGTGGACTTTGTATATACACCGGTGGACACTTTCACATTGGGACTTACATCACGCTAGGATTCTTATGGACTGTTTTAGGGTATGGTGCAAACGGACTTCACACTTTTAACAGCCTAAGTTATTCTAGTTTTATTGTGTTGTTTTAAGTTCCTTGTGAATATTGTAAATACACCTTATTTATTCATTTCTGTTGTCTGCCTCATCTTTTTAAACACTCATAACATCTCACACAGTATAATTTGACCCCAATTTTAATCAAGGTAAAGTCGACCGATAGGGCCAATCGTTACAACCTGATTTCCTTAGAGAGAACATATACTGAATAGAGAAGAGCTTTAAAATGTAATTATTTATCTGGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU524725 True 464 lncRNA 0.36 1 1389591 1390054

Neighbor

gene id symbol gene type direction distance location
CI01000321_01362387_01381302 OSBPL3, OSBPL3A coding upstream 6934 1362387 ~ 1382657 (+)
CI01000321_01348009_01350252 NA coding upstream 37817 1348009 ~ 1351774 (+)
CI01000321_01342947_01344272 NPVF coding upstream 44980 1342900 ~ 1344611 (+)
CI01000321_01242644_01243808 HOXA1A, HOXA1 coding upstream 145178 1241961 ~ 1244413 (+)
CI01000321_01238511_01240051 NA coding upstream 149265 1238374 ~ 1240326 (+)
CI01000321_01411682_01416499 NA coding downstream 21628 1411682 ~ 1416536 (+)
CI01000321_01473475_01476619 CCDC126 coding downstream 83421 1473475 ~ 1477216 (+)
CI01000321_01477590_01479280 NA coding downstream 87536 1477590 ~ 1479280 (+)
CI01000321_01480684_01483493 NA coding downstream 90630 1480684 ~ 1483792 (+)
CI01000321_01491101_01521160 IGF2BP3 coding downstream 100839 1490893 ~ 1521421 (+)
G457107 NA non-coding upstream 362 1388732 ~ 1389229 (+)
G457106 NA non-coding upstream 904 1388353 ~ 1388687 (+)
G457104 NA non-coding upstream 2604 1386549 ~ 1386987 (+)
G457000 NA non-coding upstream 89744 1295466 ~ 1299847 (+)
G457001 NA non-coding upstream 96374 1284368 ~ 1293217 (+)
G457109 NA non-coding downstream 864 1390918 ~ 1391184 (+)
G457112 NA non-coding downstream 3487 1393541 ~ 1393741 (+)
G457090 NA non-coding downstream 4332 1394386 ~ 1418110 (+)
G457121 NA non-coding downstream 40175 1430229 ~ 1431421 (+)
G457133 NA non-coding downstream 61223 1451277 ~ 1453283 (+)
CI01000321_00815160_00819665 NA other upstream 566744 815160 ~ 819749 (+)
G456774 NA other upstream 962566 426083 ~ 427025 (+)
CI01000321_03795430_03804685 SHISA7B, SHISA7 other downstream 2399264 3792915 ~ 3805511 (+)
CI01000321_04013470_04014515 CACNG8 other downstream 2616572 4013468 ~ 4015412 (+)
G459303 NA other downstream 3095343 4485397 ~ 4488552 (+)
CI01000321_04515562_04517953 MRPS21 other downstream 3125480 4515534 ~ 4518187 (+)
CI01000321_04748037_04748315 DPM3 other downstream 3357358 4747650 ~ 4749579 (+)

Expression


Co-expression Network