G457471


Basic Information

Item Value
gene id G457471
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 2485416 ~ 2485637 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU525131
GCTTTTACAGCGCTGGAGAGAGCTAAGAGGGAAGGCCTGAAAACTGTTTTGATCCCGCTTATGATGCGAGTAACACTGGGTTTTGATTGTCTGGAGCTGCTGTGCTGTTTGCGACTAACAATGAACACTTTGTATTTACTCTTGTGTACTGTATGTTCATTTTTTGTGCTTCCTTGTCGTTCGTTCATCAACTGCGCTTTATTTTTCATGAAGCATTTTGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU525131 True 222 lncRNA 0.41 1 2485416 2485637

Neighbor

gene id symbol gene type direction distance location
CI01000321_02433523_02469055 NFATC1 coding upstream 16347 2433523 ~ 2469069 (+)
CI01000321_02371786_02421055 ATP9B coding upstream 63717 2371661 ~ 2421699 (+)
CI01000321_02359797_02366314 SALL3B, SALL3 coding upstream 119057 2359797 ~ 2366359 (+)
CI01000321_02306311_02308161 GALR1, GALR1A coding upstream 177214 2306121 ~ 2308202 (+)
CI01000321_02205260_02210288 NA coding upstream 274890 2204517 ~ 2210526 (+)
CI01000321_02508568_02513821 NA coding downstream 22931 2508568 ~ 2513907 (+)
CI01000321_02515869_02522379 NA coding downstream 29709 2515346 ~ 2522484 (+)
CI01000321_02627263_02629887 NA coding downstream 140977 2626614 ~ 2629925 (+)
CI01000321_02720431_02722463 TRHRB coding downstream 234597 2720234 ~ 2723126 (+)
CI01000321_02771823_02809283 NA coding downstream 285625 2771262 ~ 2809420 (+)
G457460 NA non-coding upstream 58228 2426920 ~ 2427188 (+)
G457440 NA non-coding upstream 165049 2320005 ~ 2320367 (+)
G457439 NA non-coding upstream 165761 2319408 ~ 2319655 (+)
G457431 NA non-coding upstream 187683 2297494 ~ 2297733 (+)
G457306 NA non-coding upstream 200898 2272800 ~ 2284518 (+)
G457473 NA non-coding downstream 1264 2486901 ~ 2487500 (+)
G457474 NA non-coding downstream 2198 2487835 ~ 2489055 (+)
G457477 NA non-coding downstream 6582 2492219 ~ 2492553 (+)
G457478 NA non-coding downstream 7482 2493119 ~ 2493444 (+)
G457494 NA non-coding downstream 61494 2547131 ~ 2547395 (+)
CI01000321_00815160_00819665 NA other upstream 1662569 815160 ~ 819749 (+)
G456774 NA other upstream 2058391 426083 ~ 427025 (+)
CI01000321_03795430_03804685 SHISA7B, SHISA7 other downstream 1303681 3792915 ~ 3805511 (+)
CI01000321_04013470_04014515 CACNG8 other downstream 1520989 4013468 ~ 4015412 (+)
G459303 NA other downstream 1999760 4485397 ~ 4488552 (+)
CI01000321_04515562_04517953 MRPS21 other downstream 2029897 4515534 ~ 4518187 (+)
CI01000321_04748037_04748315 DPM3 other downstream 2261775 4747650 ~ 4749579 (+)

Expression


Co-expression Network