Gene
RNA
| Item | Value |
|---|---|
| gene id | G457474 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000321 |
| NCBI id | null |
| chromosome length | 5206101 |
| location | 2487835 ~ 2489055 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU525134 | True | 1221 | lncRNA | 0.45 | 1 | 2487835 | 2489055 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000321_02433523_02469055 | NFATC1 | coding | upstream | 18766 | 2433523 ~ 2469069 (+) |
| CI01000321_02371786_02421055 | ATP9B | coding | upstream | 66136 | 2371661 ~ 2421699 (+) |
| CI01000321_02359797_02366314 | SALL3B, SALL3 | coding | upstream | 121476 | 2359797 ~ 2366359 (+) |
| CI01000321_02306311_02308161 | GALR1, GALR1A | coding | upstream | 179633 | 2306121 ~ 2308202 (+) |
| CI01000321_02205260_02210288 | NA | coding | upstream | 277309 | 2204517 ~ 2210526 (+) |
| CI01000321_02508568_02513821 | NA | coding | downstream | 19513 | 2508568 ~ 2513907 (+) |
| CI01000321_02515869_02522379 | NA | coding | downstream | 26291 | 2515346 ~ 2522484 (+) |
| CI01000321_02627263_02629887 | NA | coding | downstream | 137559 | 2626614 ~ 2629925 (+) |
| CI01000321_02720431_02722463 | TRHRB | coding | downstream | 231179 | 2720234 ~ 2723126 (+) |
| CI01000321_02771823_02809283 | NA | coding | downstream | 282207 | 2771262 ~ 2809420 (+) |
| G457473 | NA | non-coding | upstream | 335 | 2486901 ~ 2487500 (+) |
| G457471 | NA | non-coding | upstream | 2198 | 2485416 ~ 2485637 (+) |
| G457460 | NA | non-coding | upstream | 60647 | 2426920 ~ 2427188 (+) |
| G457440 | NA | non-coding | upstream | 167468 | 2320005 ~ 2320367 (+) |
| G457439 | NA | non-coding | upstream | 168180 | 2319408 ~ 2319655 (+) |
| G457477 | NA | non-coding | downstream | 3164 | 2492219 ~ 2492553 (+) |
| G457478 | NA | non-coding | downstream | 4064 | 2493119 ~ 2493444 (+) |
| G457494 | NA | non-coding | downstream | 58076 | 2547131 ~ 2547395 (+) |
| G457495 | NA | non-coding | downstream | 58588 | 2547643 ~ 2547901 (+) |
| G457506 | NA | non-coding | downstream | 112808 | 2601863 ~ 2602609 (+) |
| CI01000321_00815160_00819665 | NA | other | upstream | 1664988 | 815160 ~ 819749 (+) |
| G456774 | NA | other | upstream | 2060810 | 426083 ~ 427025 (+) |
| CI01000321_03795430_03804685 | SHISA7B, SHISA7 | other | downstream | 1300263 | 3792915 ~ 3805511 (+) |
| CI01000321_04013470_04014515 | CACNG8 | other | downstream | 1517571 | 4013468 ~ 4015412 (+) |
| G459303 | NA | other | downstream | 1996342 | 4485397 ~ 4488552 (+) |
| CI01000321_04515562_04517953 | MRPS21 | other | downstream | 2026479 | 4515534 ~ 4518187 (+) |
| CI01000321_04748037_04748315 | DPM3 | other | downstream | 2258357 | 4747650 ~ 4749579 (+) |
