G457478


Basic Information

Item Value
gene id G457478
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 2493119 ~ 2493444 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU525138
ATACCACACAATGTGTATATGAATAAAGGACATCGTCACATTTTAATTGATGACGTGTTTTTGTAGGCAAAACCCAGAAACGAGTTAGCATTTTAGGACTTCCGGTTCCATCGCCCCGAAGTCAATGGGTTTTTTGAATGGGTTTTTGCTAAATCGCCTGAAATAAGGTCTGTGGTTAACAAAGCCTCTAAATATTTTCATGTTTTGATCTATGACATAAAACACACCAGTTATAAACCGCTTGTGATTTTTTAAACCTTTATTGTGTCTTAAAAATGGCGGTTGCTAACAAGTTGATAAAAGGGACTACTTCCTTTGGCAGGAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU525138 True 326 lncRNA 0.37 1 2493119 2493444

Neighbor

gene id symbol gene type direction distance location
CI01000321_02433523_02469055 NFATC1 coding upstream 24050 2433523 ~ 2469069 (+)
CI01000321_02371786_02421055 ATP9B coding upstream 71420 2371661 ~ 2421699 (+)
CI01000321_02359797_02366314 SALL3B, SALL3 coding upstream 126760 2359797 ~ 2366359 (+)
CI01000321_02306311_02308161 GALR1, GALR1A coding upstream 184917 2306121 ~ 2308202 (+)
CI01000321_02205260_02210288 NA coding upstream 282593 2204517 ~ 2210526 (+)
CI01000321_02508568_02513821 NA coding downstream 15124 2508568 ~ 2513907 (+)
CI01000321_02515869_02522379 NA coding downstream 21902 2515346 ~ 2522484 (+)
CI01000321_02627263_02629887 NA coding downstream 133170 2626614 ~ 2629925 (+)
CI01000321_02720431_02722463 TRHRB coding downstream 226790 2720234 ~ 2723126 (+)
CI01000321_02771823_02809283 NA coding downstream 277818 2771262 ~ 2809420 (+)
G457477 NA non-coding upstream 566 2492219 ~ 2492553 (+)
G457474 NA non-coding upstream 4064 2487835 ~ 2489055 (+)
G457473 NA non-coding upstream 5619 2486901 ~ 2487500 (+)
G457471 NA non-coding upstream 7482 2485416 ~ 2485637 (+)
G457460 NA non-coding upstream 65931 2426920 ~ 2427188 (+)
G457494 NA non-coding downstream 53687 2547131 ~ 2547395 (+)
G457495 NA non-coding downstream 54199 2547643 ~ 2547901 (+)
G457506 NA non-coding downstream 108419 2601863 ~ 2602609 (+)
G457554 NA non-coding downstream 173966 2667410 ~ 2667633 (+)
G457555 NA non-coding downstream 174827 2668271 ~ 2668782 (+)
CI01000321_00815160_00819665 NA other upstream 1670272 815160 ~ 819749 (+)
G456774 NA other upstream 2066094 426083 ~ 427025 (+)
CI01000321_03795430_03804685 SHISA7B, SHISA7 other downstream 1295874 3792915 ~ 3805511 (+)
CI01000321_04013470_04014515 CACNG8 other downstream 1513182 4013468 ~ 4015412 (+)
G459303 NA other downstream 1991953 4485397 ~ 4488552 (+)
CI01000321_04515562_04517953 MRPS21 other downstream 2022090 4515534 ~ 4518187 (+)
CI01000321_04748037_04748315 DPM3 other downstream 2253968 4747650 ~ 4749579 (+)

Expression


Co-expression Network