G458687


Basic Information

Item Value
gene id G458687
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 2722036 ~ 2724689 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU526530
GGTTTTTGAATTTTAACTTCTGTGGCAGAAAAAAAAAGTGTTATATGCAGAGAATAATTACAGTTTAAACCAATTAGACATCGGTACAACAATACGCAGAGCATGATTCAGTACCGTTCATGTAAATCAGTAGAAAAGATTTTCAGAAATCACCACTATCATAAAACAATCCATTAATGATTTAAACTAAATAATGAGTCTTTGGTGAGCCTGCAAGTTTATTTTATTCAGAAAGAGGCTTTAAAATAGACATTTTAGATATAATTTTGTGTTTTGTTAAACCCTGAATAATAACACAAATGCAAAATAGCAAATACACATAGGCTATAGTTATAATATGGATACTAACATGTTTGAATGATTCAGCAATAGTACACACTCAAGTATATCAAGATACCGAAGTATATCATTTACCAAACTAAGAGAACAATTACAGCACAATTAAACATACTTAACACTTTATACTTTTTTAAAATTACATATGCTTGAACACTTCAGAACACTCCTCTGAAACCAAGTGTGTAGAGACAAGATTCAAACCCATTTGTGTAACTGTAACATATCATAAATCTGCCTTTTATAAGACTTTGAAAAAATAAATCCTCTGCATCTGAAACTAGATGCTATTTTACTATTTTTCTGCAAACATCTGTTTAAACTGAACAAGCCCATTCACTAAAATATCACTAGAATAGCCTATTCATTAACACTGGACTACAAACCTGACTAGCCATTGAAACAGACATAAAGTGACTATTTTCCACATGAACACCACCAAGATATTATATTAAAAACCTAAAACACAACATATTAATTTAAAGTAATTGAATACACAGTCAATTGTGATAAAGAAAATATGCAACTTCTTTTGCCACATTTGTTGAGAAACCATATACAAACCCATGTGATGAGATTTAGGTTATCAGCTCACAAATACAATCATATGCTGTCTACCCATTTATGATACAAGAGAGTGAATTAAAAAAGGTGAAATATTCATTTGTCAGATGTAATTTTCATACATTCATTTATTTAGTAATCTAAATCAGTTATAGTCAAAAGAGTCTTTTATTATATTTAAAGATATTATATTTGATGTCTTACTTTGTTCCATCTTAGTTTAATATGAAGAGTAAAGTCCCTAAATATAAGCAAGGTATTCATAGGTTCATTTCACCTAAAAGTCTACACAGAGTGGTGCTTTTTACGGAGCCCCGCACATGACATGCAAGAAAAAAATTAAATCATGCGCACGATTTAGCCTACTATTTTTTTCCTGCATGTCATGTCTGGGGATCCGTAGCTTTTTACCATTTCTCTATAAGTTTGAGCTGTCGGACATTGGCTCAACCAATAGTGTGAGTTTTTGGGTGGGACTATGTGTTTTAAGCGACCAGTGGCAATCAAGGGGAGTGTTTGGGAAACGTGTGAAAACAATGATTATTTTTGCATTTCCATTTGGTTGCGCTAATGGCACATATTACAATTCAGCTTTAAGAATGCCTAACTAAAAATATTTTACATAAATAAATAGATGTAACAATGTCTCCTTTATCTTTTTATTCATGCATTCCTTCATTTGTTCATCCGAATTTTGCTTATTTACAATAAACTTGTATGAAAGGCGCACATACAACTTTAGTCTAAATATATTTCAGTGCGACATTATGTCAGATGGCCAATCAAATTAAACAAAAAATTAGCTATACTTCCATTTTAAGTTTAGATCGAAAAAATTGTGTATTATACGTATATATATACAGTGGGACCTAAACTAAGTTAACTCTCATTGAACATTCTTGAAACAACTGCAACTGCAGAAAAAAGCAGTTTCAGCATTTTTTTTCCCAGGGGTCTGCAGGGGAAGAGAAGGCCACTCATTAATAACAATGACAACCCCCAAAGATGTTTGCAGATCAATAATATGTATTAAATTCTGCATCACATATGCAATACACTGCAAGTTTAATTAAGAATAATGACTTTAGCAAATAATGCAACCATGCAACTTATGTAACGTGGTTTAATTTCAGCTGAACAGTTTCCAGGGAGCTGTTTGGCAAGTATATGAGACGGGAAGATAAATTTGACTGTGTTGAGCATGACTTTTTTTAAAAATAACGATAAAGAGAAACTGTTTGAGTGCTGTCCCTGCAGTTCAATGTGTAGTGTTATAGATCGCTAGTACTCAAGAGATTTATGGTGTGTGTAGCTATTGTGAGTTTATCAGGCCTGACTGAAAGTCTCCTTGCTAAAGTCGCAGTTCCCCGGATACAGAAGCTTCTTATCAGGGAACAACTCATCTGTCGGTGTCAAATCGTCTATCTCAGTTGAAAAATGCCCTGTGCTTTCCACCGTTGAAGTTTCCTTGGCAACACTGTAGGTTAGTGCCACACTATAGGCTGCCTTATTCACCAGAGCGGTGCGCCCACAGCGGCAAAGCCTTCTGAAGGCAGCGCGGAACTTTTGAGACATAGCGTTGTAGATAAGAGGGTTAATGGCACTGTTGAGGTAGACACATGTGCGGCAGAACAGCAGAAACCAGGTGTCCAGGTAGGCATCTTGCAGGAAAGAGTTAACCACCACCAGAGTGCGGTACGGCATCCAAAGCACAGCAAACAGAACAACCACCACTGCCAGCATTTTTGTAACCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU526530 True 2654 lncRNA 0.35 1 2722036 2724689

Neighbor

gene id symbol gene type direction distance location
CI01000321_02702079_02702974 NA coding downstream 19062 2701859 ~ 2702974 (-)
CI01000321_02671166_02689684 EIF3E.L, EIF3EB, EIF3E, EIF3E.S, EIF3EA coding downstream 32294 2670522 ~ 2689742 (-)
CI01000321_02656580_02666438 NA coding downstream 55598 2656571 ~ 2666438 (-)
CI01000321_02606321_02610175 NA coding downstream 111471 2605975 ~ 2610565 (-)
CI01000321_02563851_02571773 PLECA coding downstream 150263 2563851 ~ 2571773 (-)
CI01000321_02739755_02767802 NUDCD1 coding upstream 14793 2739482 ~ 2767968 (-)
CI01000321_03028470_03033496 NA coding upstream 303708 3028397 ~ 3034891 (-)
CI01000321_03044953_03048124 NA coding upstream 320191 3044880 ~ 3048203 (-)
CI01000321_03067511_03106086 GRB10B, GRB10, GRB10A coding upstream 342051 3066740 ~ 3106086 (-)
CI01000321_03196013_03203541 NA coding upstream 471261 3195950 ~ 3203688 (-)
G458686 NA non-coding downstream 590 2720138 ~ 2721446 (-)
G458682 NA non-coding downstream 6642 2715107 ~ 2715394 (-)
G458672 NA non-coding downstream 16380 2705401 ~ 2705656 (-)
G458651 NA non-coding downstream 52009 2669644 ~ 2670027 (-)
G458648 NA non-coding downstream 52504 2668489 ~ 2669532 (-)
G458752 NA non-coding upstream 162378 2887067 ~ 2890372 (-)
G458756 NA non-coding upstream 169117 2893806 ~ 2894742 (-)
G458777 NA non-coding upstream 228378 2953067 ~ 2953908 (-)
G458814 NA non-coding upstream 327083 3051772 ~ 3052354 (-)
G458820 NA non-coding upstream 406458 3131147 ~ 3131363 (-)
CI01000321_02282824_02284376 MBPA other downstream 437525 2282238 ~ 2284934 (-)
CI01000321_01451689_01453423 NPY other downstream 1268729 1451194 ~ 1453530 (-)
G458122 NA other downstream 1685888 1032063 ~ 1036148 (-)
G456607 NA other downstream 2622841 96116 ~ 99195 (-)
G456609 NA other downstream 2682096 39518 ~ 39940 (-)
G458802 NA other upstream 363426 3088115 ~ 3091927 (-)
G458859 NA other upstream 747192 3471881 ~ 3489534 (-)
G458957 NA other upstream 936937 3661626 ~ 3666999 (-)
CI01000321_03737149_03737996 TMEM238A other upstream 1011767 3736456 ~ 3738096 (-)

Expression


Co-expression Network